Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b18
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 243 1e-64
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 97 1e-20
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 82 5e-16
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 76 3e-14
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 62 3e-10
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 46 4e-05
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 34 0.14
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 32 0.55
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866... 30 2.2
04_03_0829 + 20123522-20123668,20124771-20124881 30 2.2
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 30 2.2
08_02_1624 - 28334067-28335851 29 5.1
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951 29 5.1
10_03_0013 + 7045552-7045686,7045868-7046083 28 6.8
10_01_0120 - 1480288-1481160 28 6.8
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 28 6.8
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 28 9.0
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 28 9.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 9.0
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 243 bits (594), Expect = 1e-64
Identities = 116/195 (59%), Positives = 142/195 (72%)
Frame = +1
Query: 154 EEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGITASSDYGGTGG 333
+ Q+Q ++ V FAQ+ +AP AA ID N+F + WK +GD L G+TA +YGG G
Sbjct: 33 DTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGL 92
Query: 334 KYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALA 513
Y HC+ MEE+SRASG + LSYGAHSNLC+NQ+ R+G+ QK KYLPKL SGEH+GALA
Sbjct: 93 GYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALA 152
Query: 514 MSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQQHGIS 693
MSEP SGSDVVSMK +AEK YV+NGNK W TNGP A LVVYAKT+ + + GI+
Sbjct: 153 MSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSK--GIT 210
Query: 694 AFLIEKDYPGFSTAQ 738
AF+IEK PGFSTAQ
Sbjct: 211 AFIIEKGMPGFSTAQ 225
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 97.1 bits (231), Expect = 1e-20
Identities = 72/209 (34%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Frame = +1
Query: 118 HYPIDDHVFGLSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWK--KLGDLGL 291
+Y IDD L+ E+Q +RK V +KE+AP A ++ F PF KL LG+
Sbjct: 43 YYQIDDL---LTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEF----PFHAIPKLSSLGV 95
Query: 292 LGITASSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKY 471
G T YG G + + M E++R + HS+L + I G+E QK KY
Sbjct: 96 AGGTIKG-YGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKY 154
Query: 472 LPKLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYA 651
LP L +G A++EP GSD S+ A K + ++G K WI N ADVLVV A
Sbjct: 155 LPSLAQLTAVGCWALTEPNHGSDASSLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLA 214
Query: 652 KTNWSTSKQQHGISAFLIEKDYPGFSTAQ 738
+ + +KQ +G F++ K PG +
Sbjct: 215 RN--ANTKQLNG---FIVRKGAPGLKATK 238
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 81.8 bits (193), Expect = 5e-16
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 3/200 (1%)
Frame = +1
Query: 148 LSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFK-ELRPFWKKLGDLGLLGITASSDYG- 321
L+EE++ L+ V F + E+AP ++ ++ F L P K+ LG+ G T YG
Sbjct: 61 LTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIP---KMSTLGIAGGTIKG-YGC 116
Query: 322 -GTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEH 498
G G C + E++R IA S L + I + G+E QK KYL L +
Sbjct: 117 PGLSGPACAMCFL--EIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQK 174
Query: 499 IGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQ 678
+ A+SEP GSD S+ A K ++LNG K W N AD+ VV A N ST++
Sbjct: 175 VCVYALSEPNHGSDASSLNTTARKVPGGWILNGQKRWPANSSFADIFVVLA-CNTSTNQ- 232
Query: 679 QHGISAFLIEKDYPGFSTAQ 738
I+ F++ PG ++
Sbjct: 233 ---INGFIVNGGAPGLKISK 249
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 76.2 bits (179), Expect = 3e-14
Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 2/215 (0%)
Frame = +1
Query: 85 TANKTGHRCISHYPIDDHVFGLSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPF 264
TA++ +Y DD L++E++ LRK V ++E+AP E ++ F PF
Sbjct: 29 TASQFPPAVSDYYQFDDL---LTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEF----PF 81
Query: 265 WK--KLGDLGLLGITASSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQIN 438
KL LGL G T +D + +S ++ + LC
Sbjct: 82 HAIPKLATLGLAGGTTKTD--------------QDNYFLSSLFLSFQFSVQIALC----- 122
Query: 439 RNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITN 618
G+E QK KYLP L IG A++EP GSD S++ A K + L+G K WI N
Sbjct: 123 --GSEAQKQKYLPSLTQFRTIGCWALTEPDYGSDASSLRTAATKVPGGWHLDGQKRWIGN 180
Query: 619 GPDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPG 723
G ADVL++ A+ S + Q +G F+++K PG
Sbjct: 181 GTFADVLIILARN--SDTNQLNG---FIVKKGAPG 210
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +1
Query: 439 RNGTEEQKSKYLPKLCSGEHIGALAMSEPG-SGSDVVSMKLRAEKKGDYYVLNGNKFWIT 615
R GT+EQ+ ++L L G+ AM+EP + SD +++ ++GD+YV+NG K+W +
Sbjct: 507 RYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTS 566
Query: 616 NG--PDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPG 723
P +LV+ KT++S K + S L++ PG
Sbjct: 567 GAMDPRCQILVLMGKTDFSAPKHKQQ-SMILVDVKTPG 603
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Frame = +1
Query: 409 HSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRA--EKKGDY 582
H + V I GTEEQ+ K+LP + IG A +E G GS+V ++ A + K D
Sbjct: 107 HWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPKTDE 166
Query: 583 YV-----LNGNKFWITN-GPDADVLVVYAKTNWSTSKQQHGISAFLIE 708
+V L +K+W G + VVYA+ T + +GI F+++
Sbjct: 167 FVIHSPTLTSSKWWPGGLGKASTHAVVYARL--ITEGKDYGIHGFIVQ 212
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 583 YVLNGNKFWITNGPDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPGFSTAQ 738
++LNG K W NG ADV VV A +TS Q I+ F++ PG ++
Sbjct: 102 WILNGQKRWPANGSFADVFVVLA---CNTSNNQ--INGFIVNGGSPGLKISK 148
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 31.9 bits (69), Expect = 0.55
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Frame = +1
Query: 340 SDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMS 519
+++ +ME A + + G +L I GT++ + ++ + + ++ G AM+
Sbjct: 133 AEYFAVMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMT 192
Query: 520 EPGSGSDVVSMKLRA--EKKGDYYVLN-----GNKFWITN 618
E GS+V +++ A + D +++N K+WI N
Sbjct: 193 ELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGN 232
>04_04_0915 -
29385926-29385952,29386069-29386285,29386367-29386622,
29386745-29387072,29387157-29387587,29388014-29388163,
29388212-29388398,29388709-29388750,29389007-29389555,
29389778-29390032
Length = 813
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Frame = -2
Query: 244 NCFLCRFQLLLAPIPSEQS----RIPFF*AVVVLRRVQTHDRQWD-----NARCIDD--R 98
NCF+ R +L P+ ++ S + P F V+L ++T+DR WD N+ +D R
Sbjct: 208 NCFIARLSSVL-PVETDSSTNEPKEPLF--AVILINMKTYDRIWDCLHKGNSHIVDTVWR 264
Query: 97 FYSRFSL 77
+ S+F L
Sbjct: 265 YKSKFQL 271
>04_03_0829 + 20123522-20123668,20124771-20124881
Length = 85
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 394 LSYGAHSNLCVNQINRNGTEEQKSKYLPKL 483
L+ G NLC+ +R+G E +K+K P++
Sbjct: 26 LAIGQGENLCIQMQHRDGNENEKNKISPRV 55
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 446 PFLLIWFTHKFE*APYDKAIPPLALDN-SSIMTQWSEYFPPVPP*SELAVIPSNPRSP 276
P LL ++ H P PP D+ + W + PP PP L +PS+P P
Sbjct: 117 PHLLHYYGHP---PPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSPP 171
>08_02_1624 - 28334067-28335851
Length = 594
Score = 28.7 bits (61), Expect = 5.1
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +1
Query: 316 YGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGE 495
Y G+GG+ + + + G +AL Y H + V I + + S + + G
Sbjct: 219 YSGSGGRLRNRLDHSADQTLQRGNLALHYSCHYGIEVRVIRGHACDHSPSSKV-YVYDGL 277
Query: 496 HIGALAMSEPG-SGSDVVSMKL-RAEKKGDYYVLNGNKFWITNGPDADVL 639
+ + PG SG DV KL R + D G+K W T D L
Sbjct: 278 YRVVTSTFGPGKSGRDVCKFKLVRIPGQDDL----GSKAWHTAAELKDAL 323
>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
Length = 189
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 283 LGLLGITASSDYGGTGGKYSDHCVIMEELSRASGGIA 393
L LL ++ASS GG GGK ++H + + SGG A
Sbjct: 44 LVLLRVSASSSGGGGGGK-AEHSAVGAAVGDESGGAA 79
>10_03_0013 + 7045552-7045686,7045868-7046083
Length = 116
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 157 EQQQLRKMVFDFAQKELAPK--AAEIDKENNFKELRP 261
E+++LRKM +FA+K K A ++D+ + KE P
Sbjct: 68 EERELRKMAREFAEKNERAKERAGKVDRAQHAKEAGP 104
>10_01_0120 - 1480288-1481160
Length = 290
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 724 TQDNLFQLKKLKSHVVVYSSTNLSWRI 644
T +N F + KLKS +VY ST + I
Sbjct: 256 TSENPFSVNKLKSFFIVYHSTKCDYHI 282
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 296 VLPQVPTMEVQGENIRTIVSLWRNYQGPAVVSP 394
+ P + + G +RT V W NY G +V+SP
Sbjct: 396 IQPAYDIVSIIGSGLRT-VGYWSNYSGLSVISP 427
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 365 SSIMTQWSEYFPPVPP*SELAVIPSNPRSP 276
S ++ W+ PP+P S LA +P N R P
Sbjct: 23 SYLLAVWTHPAPPLPA-SSLAAVPCNTRQP 51
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 451 EEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKG 576
++Q K++ +LC+ +G EPG+ V RAE G
Sbjct: 12 QQQSDKHMEELCANIKVGDRCEVEPGAKRGTVKFVGRAEALG 53
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 386 PPLALDNSSIMTQWSEYFPPVPP*SELAVIPSNPRSPS 273
PP +S T Y+PP P ++ PS+ SP+
Sbjct: 311 PPAPSSGTSPTTPGGSYYPPTPSIGDVPPSPSSDTSPT 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,556,171
Number of Sequences: 37544
Number of extensions: 458059
Number of successful extensions: 1320
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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