Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b18
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.75 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.75 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.75 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 RLCSEGIGAKSS*NRQRKQF*RTKAILEETWR 281
           +LC + +G  +S N + +Q  + KA  EET+R
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETYR 574


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 RLCSEGIGAKSS*NRQRKQF*RTKAILEETWR 281
           +LC + +G  +S N + +Q  + KA  EET+R
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETYR 574


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 RLCSEGIGAKSS*NRQRKQF*RTKAILEETWR 281
           +LC + +G  +S N + +Q  + KA  EET+R
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETYR 574


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 430 GSRTNSNELHMTRRYH 383
           GSRT  NEL   RR H
Sbjct: 48  GSRTTHNELEKNRRAH 63


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 265 WKKLGDLGLLGIT 303
           WKK+ D+ LLG+T
Sbjct: 108 WKKIFDINLLGLT 120


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 164  NSSEKWYSTLLRRNWRQKQ 220
            +S +  YSTL R  WRQ+Q
Sbjct: 1336 SSIDSDYSTLERTAWRQQQ 1354


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 551 IDTTSLPDPGSDIASAPICS 492
           ++T S P P   IASAP  S
Sbjct: 505 VETNSSPSPNPRIASAPSSS 524


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 476 GKYLLFCSSVPFLLIWFT 423
           GKYLLF   +  L IW T
Sbjct: 313 GKYLLFTMILVTLSIWIT 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,388
Number of Sequences: 438
Number of extensions: 5195
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)