Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b17
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    34   0.025
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    32   0.076
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    30   0.40 
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    29   0.94 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   1.2  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.8  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   3.8  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.7  

>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +1

Query: 577 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFII 690
           I+SI +L  A++P+ SA L++ FGR+  L +G + FI+
Sbjct: 87  ILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIV 124


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 565 QGSWIVSI-MILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKVLGQCCTS 741
           Q SW  +  MI C+A  P+   +  D +GRK TLL     F IG  L   ++ L Q   +
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKF-CDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAA 183

Query: 742 R 744
           R
Sbjct: 184 R 184


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +1

Query: 574 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKVLGQCCTSR 744
           +I S   L + L  I +  LAD FGRK  + + +I  I+G I+ + A  L      R
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGR 187


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 565 QGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKVLGQCCTSR 744
           Q   I S     + ++   S +LAD  GRK  LL     F+IG +++  ++ +      R
Sbjct: 121 QKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGR 180


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 553 TTAYQGSWIVSIM----ILCSALT-PIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 717
           TT +  S  VS++     LC  +  PI  A L++  GRK  LL+G   F I  I V VAK
Sbjct: 162 TTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAK 221


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = +1

Query: 559 AYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIV 711
           AYQ S  VS+          PS  L  KFG      L A+  IIGW LV +
Sbjct: 78  AYQYSAAVSVFYATYITAETPSVLLVKKFG--PHYYLSAM--IIGWSLVTI 124


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 580 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 717
           +S+ +   A  PI  A +++  GRK  L++G   F I  I V VAK
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAK 184


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 145 VGLLVHDARRTRAMSWYRDGNE*ATERCFSRLSNERERRTI 23
           V +L  D+    ++S+  +  E   +RCFSR  N   R  +
Sbjct: 791 VSVLSKDSDLVNSVSYLHNSMEWFLQRCFSRFMNGSRRMNV 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,972
Number of Sequences: 5004
Number of extensions: 52223
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)