Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b17
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    35   0.054
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    35   0.054
AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical ...    35   0.054
AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical ...    35   0.054
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    31   0.87 
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    31   0.87 
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    29   2.7  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    29   2.7  
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 496 YGWPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLG 672
           YG  +   +YL +E    P+ A   ++I  +    + LTP+  + +AD  FGR   +L G
Sbjct: 32  YGMKTILFIYLITEHEFSPSKA---TFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYG 88

Query: 673 AIPFIIGWILVIVAKV 720
           +  +++G +L+ +  V
Sbjct: 89  SSIYVVGHVLLSLGAV 104


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 496 YGWPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADK-FGRKTTLLLG 672
           YG  +   +YL +E    P+ A   ++I  +    + LTP+  + +AD  FGR   +L G
Sbjct: 32  YGMKTILFIYLITEHEFSPSKA---TFIYHLFTCIAYLTPLIGSIMADSVFGRFKVILYG 88

Query: 673 AIPFIIGWILVIVAKV 720
           +  +++G +L+ +  V
Sbjct: 89  SSIYVVGHVLLSLGAV 104


>AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical
           protein C09D4.1b protein.
          Length = 475

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 574 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 708
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI ++
Sbjct: 80  WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 125


>AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical
           protein C09D4.1a protein.
          Length = 586

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 574 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WILVI 708
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI ++
Sbjct: 191 WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWIKLL 236


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 505 PSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG-AIP 681
           P+P    ++  +    T AY  +WI +I  + + +  +   +L D FGRK    +G +I 
Sbjct: 75  PAPFHSMVQDFKMFCGTKAYDSAWIATIQFIGALVGALVYGHLGDHFGRKPVSFVGISIG 134

Query: 682 FIIG 693
            I G
Sbjct: 135 IIFG 138


>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 532 SEESSIPTTAYQGSW--IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILV 705
           +E  ++  + ++ +W  +++I  +  A   + SA +AD+ GRK TL LG    ++  ++ 
Sbjct: 46  NEPYTLSNSEFEWAWSAMLAIYFIGFAAGSVISAGVADRIGRKWTLFLGTCGSLLSSLIA 105

Query: 706 IVAKVL 723
           + A +L
Sbjct: 106 LFAIIL 111


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 553 TTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG 672
           T AY  +W+ +I  +   +  I   +L D FGRK     G
Sbjct: 91  TKAYDAAWVATIQFIGVLIGAITYGHLGDHFGRKPVSFFG 130


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 574 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKVL 723
           WI  I+ +C+ + P    +  +K GR+   L      ++  +L+ V+ +L
Sbjct: 320 WISVILSICNLIGPFAPMFFIEKLGRRKLFLFSCAGVVVSLVLIGVSFLL 369


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 622 SAYLADKFGRKTTLLLGAIPFIIGWILVIVAKV 720
           S +LADKFGRK+TLL   I  ++  + +  +K+
Sbjct: 118 SGFLADKFGRKSTLLYNNILALLAAVCLSTSKL 150


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 631 LADKFGRKTTLLLGAIPFIIGWILVIVAKVLGQCCTSR 744
           ++D FGRK    + ++  +IGW++V+ ++ L     SR
Sbjct: 149 ISDSFGRKIGSQVASLGMLIGWLIVVQSRNLLHFTISR 186


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 502 WPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAI 678
           W +  L +L+ +   + T    G +I +   LC+A   + +  LAD  G ++  LL A+
Sbjct: 26  WTTTLLSFLQWDTEEVMTITDLG-YIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAV 83


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 514 TLLYLESE--ESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFI 687
           T+LY  ++   SS  +  +   WI  ++ LC+ + P     L +K GR+   L      +
Sbjct: 297 TILYYTADIIRSSGISNNHTTIWISVLLSLCNFIGPFVPMSLIEKVGRRIIFLFSCGLVV 356

Query: 688 IGWILVIVAKVL 723
           +  + + VA +L
Sbjct: 357 LSLVFIGVAFLL 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,848
Number of Sequences: 27780
Number of extensions: 276376
Number of successful extensions: 733
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)