Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b12
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 30 0.33
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 29 0.58
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 29 1.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 7.2
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 7.2
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 25 9.5
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 25 9.5
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 25 9.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 9.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.5
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 491 KIQDNATETVTKAILSMAEPSKFEQEPDMGENSNGQSEESKRKLNRRR 634
+I ATET K + +A SK Q+ + GE++ E+ ++K R+R
Sbjct: 128 RIDSVATET-GKLLSGLANDSKVLQQTEEGEDAENDDEDLQKKKERKR 174
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.58
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -2
Query: 487 LYIWSILPILTVDLFKYFKIRPFYHNNLISISSLQKSYICLF*ISELFITALGAISY 317
L IWSI+ ILT+D K FKI+ Y + S + + + LFI L A +Y
Sbjct: 110 LIIWSIITILTID--KKFKIKESYLEWIGENQSHSEIWGPIVIYVGLFILLLSAFNY 164
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 632 RYTDFRK---VALEMRNRQRTVEEKLDKLINIVQESNNIXRDRN 754
R+T K +ALE+R R R + +D+ I + E NN+ + +
Sbjct: 777 RFTTISKLVIIALELRGRHRGLPRAVDRAILLPSEKNNLKEEED 820
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 508 CIVLNFYLYIWSILPILTVDLFKYFKIRPFYHNNLISISSLQKSY 374
CI +F +IW +LP L + P N++ ++S KSY
Sbjct: 350 CIFTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYTVSG--KSY 392
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 7.2
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Frame = +2
Query: 425 PYFEIFEQIYSENGEY----RPDIQVKIQDNATETVTKAILSMAEPSKFEQEPDMGENSN 592
P+ ++ E Y E D+ + DN + EP EQ D E
Sbjct: 451 PFVKVGENDYDPEAELSAEENDDVSEALDDNISGEAVPISKKNDEPENVEQIDDAEEEDL 510
Query: 593 GQSEESKRKLNRRRYTDF----RKVALEMRNRQR---TVEEKLDK 706
E + + Y+++ K A + + RQR T EEK +K
Sbjct: 511 EHQRELEAEAGGVAYSEYVKQNSKSAKKTKKRQRDTLTAEEKEEK 555
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 215 NSTKTLLDLYLQNLDKFRSSKVK 283
+S ++ DL++Q L+K+R+ KVK
Sbjct: 44 SSKRSTSDLHVQLLEKYRNGKVK 66
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 461 SHCRFVQIFQNKAILS*QSHFYFV 390
SH RFVQ+ + KA L YFV
Sbjct: 189 SHFRFVQVMKPKASLKESREAYFV 212
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 638 TDFRKVALEMRNRQRTVEEKLDKLINIVQESN 733
TD + VA E+RN Q ++ +D NI++E N
Sbjct: 246 TDDQVVAGEIRNIQLVLDMTMDLYENIIKEYN 277
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 578 GENSNGQSEES-KRKLNRRRYTDFRKVALEMRNRQRTVEE 694
G+NSN Q EES +K +++ + R L+ +TVEE
Sbjct: 125 GQNSNDQPEESDDKKKRKKKVKEIRATRLD----DKTVEE 160
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 299 PRQSSSLLLNCEICPNFVNINLKVFWYYYCPS 204
PR S+S LN + N N+ K+F + CPS
Sbjct: 10 PRISTSSKLNTVLSKNKENVPGKLFKKFKCPS 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,147
Number of Sequences: 5004
Number of extensions: 60083
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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