Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b12
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 40 0.003
02_01_0035 - 220036-221419,222050-222801 30 1.9
01_06_1482 - 37680159-37680356,37680411-37680452,37680748-376808... 30 2.5
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 29 4.3
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 5.7
05_01_0517 + 4403644-4403796,4404025-4404307,4404324-4404749,440... 29 5.7
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 5.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 7.6
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 7.6
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 28 7.6
04_03_0138 + 11710595-11711271,11711533-11711665,11711819-117119... 28 10.0
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Frame = +2
Query: 206 WDNNSTKTLLDLYLQNLDKFRSSKVKKKTVWAEIAHAV---------GNSPESCDKKFRN 358
W + + +LLD Y ++ ++ + W ++A AV G S E C K N
Sbjct: 81 WTDGAISSLLDSYTDRFEQLNRGNLRGRD-WEDVAAAVTDGQGKSSGGKSVEQCKNKIDN 139
Query: 359 LKQTY-VRLLKRRNRNEIVMIKWPYFEIFEQI 451
LK+ Y V + + WP+F+ EQI
Sbjct: 140 LKKRYKVECQRLAGSGASAVSHWPWFKKMEQI 171
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Frame = +2
Query: 206 WDNNSTKTLLDLYLQNLDKFRSSKVKKKTVWAEIAH---AVG--NSPESCDKKFRNLKQT 370
W + + L+ + D+F+ +K +W E++ A G + + C +K+ N+ +
Sbjct: 526 WPKHEVEALIRVRTGLEDRFQEPGLKGP-LWEEVSARMAAAGYRRNAKRCKEKWENINK- 583
Query: 371 YVRLLKRRNRNEIVMIKW-PYFEIFEQIYSENG 466
Y R K + K PYF+ +++YS +G
Sbjct: 584 YFRKAKESGKKRPAHAKTCPYFDELDRLYSRSG 616
>01_06_1482 -
37680159-37680356,37680411-37680452,37680748-37680846,
37681011-37681118,37681205-37681295,37681421-37681546,
37681840-37681931,37682082-37682143,37682235-37682320,
37682470-37682603
Length = 345
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = -3
Query: 762 NNIFRSLXMLXDSCTIFINLSNFSSTVLCLFLISSATLRKSVYLRLFNFLLDSSL*PFEF 583
N + + L C +F+ +S TV CLFL + +LR S Y + L +S P
Sbjct: 255 NRLLEAYNTLLKLCAVFLLVS----TVFCLFLSNLRSLRDS-YAAMAAGSLSASNEPSSV 309
Query: 582 SPISGSCSNFDGSAIDNIALVTVSVA 505
+ I C + +++++++ SVA
Sbjct: 310 TKIISDCESALTFLNNSLSILSTSVA 335
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 583 FTHIGFLFKFRWF-SHRQYSLSDSFSCIVLNFYLYIWSILPILTVDLF 443
F +I F F WF +H +S ++ ++FY ++ LP++ + +F
Sbjct: 941 FKNITFGFTLFWFEAHAMFSAQPGYNDWFISFYNVAFTSLPVIALGVF 988
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 560 EQEPDMGENSNGQSEESKRKLNRRRYT--DFRKVALEMRNRQRTVEEKLDKLINIVQESN 733
EQE + ++S + SK+K N+ T + ++ LE RN +++ D++ ++ ++ +
Sbjct: 415 EQEKNAIKSSGSNKKHSKKKGNQNNKTVSEQDEIFLEKRNETKSLGSLGDQIADVTRDKS 474
Query: 734 NIXRD 748
+ D
Sbjct: 475 SFKND 479
>05_01_0517 +
4403644-4403796,4404025-4404307,4404324-4404749,
4404789-4405372,4417315-4417479,4417629-4417694
Length = 558
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +2
Query: 500 DNATETVTKAILSMAEPSKFEQEPDMGENSNGQSEESKRKLNRRRYTDFRKVALEMRNRQ 679
D++ E + KAI + + +E G +++ E K + Y D + RNR+
Sbjct: 274 DSSIENL-KAITTRGGTNGINKEAPSGNSAD--KEVQPEKAVPQGYCDTYLLLFPQRNRK 330
Query: 680 RTVEEKLDKLINIVQE 727
+VEE+ + + ++Q+
Sbjct: 331 SSVEEQFARFVEVIQK 346
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 524 KAIL-SMAEPSKFEQEPDMGENSNGQSEESKRKLNRRRYTDFRKVALEMRNR---QRTVE 691
KA+L + S+ E+E E + EE +RKL R R + + MR R +R
Sbjct: 503 KAVLYASGMESRDEEELLEHEKKQREKEEEQRKLERDREEELEREREMMRRREHEERKRR 562
Query: 692 EKLDKLINIVQESNNIXRDR 751
EK + +IV+++ R+R
Sbjct: 563 EKEREARHIVEKAMREARER 582
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +2
Query: 602 EESKRKLNRRRYTDFRKVALEMRNRQRTVEEKLDKLINIVQESNNIXRDRNIL 760
EES+R L + R D E+ + ++ E+ DKL++ ++ N++ + ++
Sbjct: 1216 EESERLLKKERNIDTGVNENELHQQLLSITEERDKLLSEIKYMNSVINESELI 1268
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 584 NSNGQSEESKR-KLNRRRYTDFRKVALEMRNRQRTVEEKLDKLINIVQE 727
N+NG+ E +R K + Y D + NR+ +++E+ + I +Q+
Sbjct: 156 NTNGEEETIQREKAAPQEYCDTNLLPFPQHNRKPSIDEQFARFIEAIQK 204
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 398 RNEIVMIKWPYFEIFEQIYSEN-GEYRPDIQV--KIQDNATETVTKAILSMAEPSKFEQE 568
RN ++++K +I E+ +SE ++R ++ ++ DN TE K E E +
Sbjct: 268 RNGVILVKPEDKKIIEESFSEKVNQWRKRKRMFKELWDNITENSPKDQKEFKEELGLEYD 327
Query: 569 PDMGENSNGQSEESKRKLNRRR 634
D+G N S + L++RR
Sbjct: 328 EDVGVNLQSYS-DMLTSLSKRR 348
>04_03_0138 +
11710595-11711271,11711533-11711665,11711819-11711926,
11712307-11712354,11713191-11713250
Length = 341
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 497 EFLLVYLVYTPHSHCRFVQIFQNKAILS*QSHFY 396
E +VY PH+H + +F N A+L FY
Sbjct: 246 ELAMVYEEIVPHAHMLAIDVFANYALLGYGPTFY 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,518
Number of Sequences: 37544
Number of extensions: 311958
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -