Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b09
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   5.2  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   5.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.2  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   6.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.1  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -1

Query: 212 GFSRRGIVISVKYNRLPNKRLLIILSLFAHFSSYLRYMCSLCTVTTHIHCSFAKNYAKYH 33
           GFS   +VISV +  L       IL   + F+  L   CS+ + T H    F    A YH
Sbjct: 15  GFSLCTLVISVPFFFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHF--TIACYH 72


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 298 ASCRRPASNKTSYGLMPFHVTLDGSPPLGGFPGAASLSP 182
           AS +R  S  +S  ++  + TLD  P L   PG +S +P
Sbjct: 150 ASYQRSNSKNSSASILQMNTTLDDIPILLRRPGLSSYTP 188



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 343 SASALWATAAREQHPASCRRPASNKTSYGLMPFHVTLDGSPPLGGFPGAASLSP 182
           SAS L      +  P   RRP  +  + G      ++  S  LGG PG  + +P
Sbjct: 161 SASILQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNLGGNPGLIANNP 214


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 340 PSGSAVARAPPTTRFQRHAQPRVSEL 417
           PS S +A APP+ R  R   PR + L
Sbjct: 683 PSASNMANAPPSVRNNRVLNPRGASL 708


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 295 SCRRPASNKTSYGLMPFHVTL-DGSPPLG 212
           S R P +   SYG  P H  L +G P +G
Sbjct: 162 SQRAPLNTSDSYGFTPLHFALAEGHPDVG 190


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 127 ANSDKIIKSLLFGSRLYFTEITMPRLEN 210
           A   + + S+LFG RLY + I +  LEN
Sbjct: 81  AKQSESLGSVLFGDRLYNSPIEIKMLEN 108


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 286 AGMTPDVAREPQSPTARRPSGSAVARAPPTT 378
           AG T      P +    RP  +AV R  PT+
Sbjct: 34  AGQTKPATTRPMAEARARPGATAVPRRSPTS 64


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +1

Query: 301 DVAREPQSPTARRPSGSAVARAPPTTRFQRH 393
           D     QSPT+  PS      +P T   Q H
Sbjct: 91  DSGNSSQSPTSPHPSNQPAMLSPSTAASQHH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,450
Number of Sequences: 5004
Number of extensions: 42597
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)