Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b09
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 31 0.52
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 31 0.52
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical p... 28 4.9
Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical p... 28 4.9
Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 27 8.5
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 27 8.5
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -1
Query: 392 CRWKRVVGGARATALPLGLRAVGDCGSRATSGVMPAPSFK*NKLWLNAFSRNTRRKSS 219
C WKR GG R G + GS G + P N LW+N + R +S
Sbjct: 1105 CCWKRSSGGGRKNGYQSGKKTSAGAGSGGGIGGLGGPP---NDLWINGTGSHMRAGAS 1159
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -1
Query: 392 CRWKRVVGGARATALPLGLRAVGDCGSRATSGVMPAPSFK*NKLWLNAFSRNTRRKSS 219
C WKR GG R G + GS G + P N LW+N + R +S
Sbjct: 1105 CCWKRSSGGGRKNGYQSGKKTSAGAGSGGGIGGLGGPP---NDLWINGTGSHMRAGAS 1159
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 282 GRRHDAGCCSRAAVAHSAEAERQCGGAR 365
G H +G C+ AA AH + CGG+R
Sbjct: 146 GFSHRSGVCAEAAAAHIDKYGINCGGSR 173
>Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical
protein F36A2.1d protein.
Length = 664
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 AREPQSPTARRPSGSAVARAPPTTRFQ-RHAQPRVSELLRRFEP 435
AR+P+ + P AVA+ PP T +Q ++ Q R +L++ P
Sbjct: 473 ARDPRLANSVTPQSVAVAQQPPITGYQAQYEQIRDPRILQQAAP 516
>Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical
protein F36A2.1c protein.
Length = 662
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 AREPQSPTARRPSGSAVARAPPTTRFQ-RHAQPRVSELLRRFEP 435
AR+P+ + P AVA+ PP T +Q ++ Q R +L++ P
Sbjct: 471 ARDPRLANSVTPQSVAVAQQPPITGYQAQYEQIRDPRILQQAAP 514
>Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical
protein F36A2.1b protein.
Length = 656
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 AREPQSPTARRPSGSAVARAPPTTRFQ-RHAQPRVSELLRRFEP 435
AR+P+ + P AVA+ PP T +Q ++ Q R +L++ P
Sbjct: 465 ARDPRLANSVTPQSVAVAQQPPITGYQAQYEQIRDPRILQQAAP 508
>Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical
protein F36A2.1a protein.
Length = 658
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 AREPQSPTARRPSGSAVARAPPTTRFQ-RHAQPRVSELLRRFEP 435
AR+P+ + P AVA+ PP T +Q ++ Q R +L++ P
Sbjct: 467 ARDPRLANSVTPQSVAVAQQPPITGYQAQYEQIRDPRILQQAAP 510
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 104 YMCSLCTVTTHIHCSFAKNYAKYHV 30
Y CS C V H HC+ A A Y V
Sbjct: 513 YFCSNCDVKVHPHCTSALTDACYPV 537
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 104 YMCSLCTVTTHIHCSFAKNYAKYHV 30
Y CS C V H HC+ A A Y V
Sbjct: 513 YFCSNCDVKVHPHCTSALTDACYPV 537
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 104 YMCSLCTVTTHIHCSFAKNYAKYHV 30
Y CS C V H HC+ A A Y V
Sbjct: 466 YFCSNCDVKVHPHCTSALTDACYPV 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,318
Number of Sequences: 27780
Number of extensions: 262943
Number of successful extensions: 997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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