Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b08
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    29   3.7  
Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    28   8.5  

>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 406 RIQAGIYLLFY-TLFGSLPLLIGIIYIFNDLNTITIYFLKFFNMNMYLLYISIIFAFLVK 582
           R + G+Y  +Y T+  +   L G+  I +D  T+T +  +   +N + LY  +I AFL +
Sbjct: 69  RTEMGLYYSYYKTIINAPSFLEGVQEITHD--TVTEHGHEINTLNRFNLYPEVILAFLYR 126


>Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical
           protein T08G3.1 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 409 IQAGIYLLFYTLFGSLPLLIGIIYIFNDLNTITIYFLKFFNM 534
           +  GI++  + L+ +L  +I ++Y+  D     I  LKFFN+
Sbjct: 284 LPTGIFMGIFALYPALDAVI-LMYVITDYRRALIDVLKFFNL 324


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 427 LLFYTLFGS--LPLLIGIIYIFNDLNTITIYFLKFFNMNMYLLYISIIFAFLVKIPIYF 597
           +L+  +F S    L+I I +IF+   T+   F + +    Y   +S+ F F +++PI F
Sbjct: 109 ILYKNVFSSKWTKLVIFISFIFS--TTVLTIFFQIYPCRYYFSDVSLGFTFNMEVPICF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,818,375
Number of Sequences: 27780
Number of extensions: 104818
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)