Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b06
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   414   e-117
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    81   2e-16
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    55   9e-09
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    31   0.13 
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   6.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.3  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  414 bits (1020), Expect = e-117
 Identities = 197/240 (82%), Positives = 222/240 (92%)
 Frame = +1

Query: 4   QRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLA 183
           +R+N   DE KKLYC+YVA+GQKRSTVAQ+V++L +  ++ Y+IIV+ATAS++APLQYLA
Sbjct: 215 KRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLA 274

Query: 184 PYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 363
           P+SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL
Sbjct: 275 PFSGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 334

Query: 364 ERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 543
           ERAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAIN
Sbjct: 335 ERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAIN 394

Query: 544 VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTE 723
           VGLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA T+  L+RG+RLTE
Sbjct: 395 VGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGLRLTE 454


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
 Frame = +1

Query: 49  IYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DN 225
           ++ A+G    T     +   + G+     +    A+D    + + P    +  EF     
Sbjct: 208 VFAAMGVNLETARFFQRDFEENGSFERVTLFLNLANDPTIERIITPRLALSASEFLAYQT 267

Query: 226 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGS 405
            KH L I  D++  A A R++S      PGR  YPG ++   S + ERA ++  +   GS
Sbjct: 268 EKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGR--NGS 325

Query: 406 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT 585
           +T +P++     D++  IP     IT+GQIF++ +L    I P INV  S+SR+  +A  
Sbjct: 326 ITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIG 385

Query: 586 KAM 594
           + M
Sbjct: 386 EGM 388


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
 Frame = +1

Query: 130 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 309
           T +V+ T++     +  + Y+G  + E++RD GK+  ++ D  S+ A A R++S  L   
Sbjct: 317 TTLVANTSNMPVAAREASIYTGITLAEYYRDQGKNVSMMADSTSRWAEALREISGRLAEM 376

Query: 310 PGREAYPGDVFYLHSRLLERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISI 480
           P    YP  +    +   ERA +   +      G+++ +  +    GD S  + +  + I
Sbjct: 377 PADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGI 436

Query: 481 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAG 609
                 L+ +L  +   P+IN  LS S+  +A Q    ++V G
Sbjct: 437 VQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPG 479


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 265 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 381
           Q++A  +  +LL+ P GRE   GD FY +   +   A++
Sbjct: 651 QSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARI 689


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 256 LSKQAVAYRQMSLLLRRPP 312
           LSK+A+ YR+  L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 237 GVFAIITEKFTHGTTR-VRSQVLQGSSIGSGGRHDDCVVDGTSISQSLHNLSYS 79
           G+  ++ E F H   R + S  L G      G+  +CV+   S S S  N++YS
Sbjct: 152 GIAKLLRESFIHAPGRDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYS 205


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 216 EKFTHGTTRVRSQVLQGSSIGSGGRHDDCVVDGTS 112
           +KFT     V S  + GS I S    DD + DG+S
Sbjct: 80  DKFTFSDAAVNSAGMGGSGIFSHNNADDGLGDGSS 114


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 205 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 333
           GE +   G H  ++ DDLS+   AYRQ    L+ P   + + G
Sbjct: 402 GEIWSALG-HCYLMQDDLSRAYSAYRQALYHLKDPKDPKLWYG 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,779
Number of Sequences: 5004
Number of extensions: 58552
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)