Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4b06
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 84 9e-17
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 83 2e-16
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 55 7e-08
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 53 3e-07
09_04_0131 + 14917239-14918510,14918803-14918895 29 2.8
01_05_0397 + 21753095-21753814 29 3.7
11_06_0679 - 26227654-26227770,26234067-26236217 29 4.9
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173 29 4.9
12_02_0249 + 16427590-16428975,16428990-16429082 28 6.5
04_04_0991 - 29969162-29969912,29970097-29970368 28 6.5
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 28 6.5
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 28 8.6
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 28 8.6
05_06_0097 + 25548272-25548664 28 8.6
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 84.2 bits (199), Expect = 9e-17
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 2/194 (1%)
Frame = +1
Query: 19 GEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINYTIIVSATASDAAPLQYLAPYSG 195
GED+ + ++ A+G T AQ KR + G++ + A+D + + P
Sbjct: 239 GEDDNFAI--VFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 295
Query: 196 CAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 372
E+ + GKH L+I D+S A A R++S PGR YPG ++ + + ERA
Sbjct: 296 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERA 355
Query: 373 AKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL 552
++ + GS+T +P++ D++ P IT+GQI+++ +L + I P INV
Sbjct: 356 GRIEGR--SGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 413
Query: 553 SVSRVGSAAQTKAM 594
S+SR+ +A + M
Sbjct: 414 SLSRLMKSAIGEGM 427
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 83.0 bits (196), Expect = 2e-16
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Frame = +1
Query: 28 EKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINYTIIVSATASDAAPLQYLAPYSGCAM 204
E + ++ A+G T AQ KR + G++ + A+D + + P
Sbjct: 210 EDENFAIVFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 268
Query: 205 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 381
E+ + GKH L+I D+S A A R++S PGR YPG ++ + + ERA ++
Sbjct: 269 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRI 328
Query: 382 SDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 561
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+S
Sbjct: 329 EGRK--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLS 386
Query: 562 RVGSAAQTKAM 594
R+ +A + M
Sbjct: 387 RLMKSAIGEGM 397
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 54.8 bits (126), Expect = 7e-08
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 13/192 (6%)
Frame = +1
Query: 49 IYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPYSGC 198
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y+G
Sbjct: 292 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 351
Query: 199 AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 378
+ E+FRD G + ++ D S+ A A R++S L P YP + + ERA K
Sbjct: 352 TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGK 411
Query: 379 ---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 549
+ GS+T + + GD S + + +SI L+ +L + P++N
Sbjct: 412 VKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWL 471
Query: 550 LSVSRVGSAAQT 585
+S S+ A ++
Sbjct: 472 ISYSKYSKALES 483
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 52.8 bits (121), Expect = 3e-07
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = +1
Query: 49 IYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPYSGC 198
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y+G
Sbjct: 278 VYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGI 337
Query: 199 AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 378
+ E++RD G + ++ D S+ A A R++S L P YP + + ERA K
Sbjct: 338 TIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGK 397
Query: 379 ---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 549
+ GS+T + + GD S + + +SI L+ +L + P++N
Sbjct: 398 VRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWL 457
Query: 550 LSVSR 564
+S S+
Sbjct: 458 ISYSK 462
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 178 LAPYSGCAMGEFFRDNGKHALIIYDDLSK 264
L Y+ F RDN KHAL+ Y DL K
Sbjct: 75 LYTYNALMSSHFKRDNIKHALVFYYDLLK 103
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/91 (31%), Positives = 40/91 (43%)
Frame = +1
Query: 46 CIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 225
C V I K +T A V +D ++ V+A D P+ A + AM +F D+
Sbjct: 84 CSTVVI-TKAATAAHSVFTFSDQSSMP----VAAAQDDGRPVG--AYWCSAAMSAYF-DD 135
Query: 226 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 318
KH YD ++KQ V LR PP R
Sbjct: 136 KKH----YDQVTKQVVVAAADRCFLRTPPRR 162
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 186 RSQVLQGSSIGSGGRHDDCVVDGTSISQS 100
R Q L ++G+GG D C + G QS
Sbjct: 63 RLQTLHNQTVGAGGSSDQCAIPGAREKQS 91
>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
Length = 377
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 22 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 129
EDE + + +Y+AIG + +T+A + TD NY
Sbjct: 73 EDEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNY 108
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/114 (22%), Positives = 48/114 (42%)
Frame = +1
Query: 280 RQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYI 459
R+MS + PP + + P Y ++ + + D GG+ A ++ ++ A
Sbjct: 269 RRMSRVSFDPPYQHSPPPSYTYF-VLAVDVSIRRRDGETGGTTAAATIMPLPTTELRAPS 327
Query: 460 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKL 621
T ++T GQ+ L + G R + ++ L V R + + MK M L
Sbjct: 328 CTGEATVTPGQLLLAPSSWRGGDRRSSSLALLVGR-STQVEIWTMKLTCHGMAL 380
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 4 QRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 129
+R N +DE++ + ++ A+G K ST+A + TD NY
Sbjct: 69 RRGNFSDDEERLIIRLHAALGNKWSTIATHLDGRTDNEIKNY 110
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 516 LQRYPTSHQRRSVCIACRIC 575
L+RYPT +R CIAC++C
Sbjct: 97 LRRYPTGEER---CIACKLC 113
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 516 LQRYPTSHQRRSVCIACRICCSDQGYEAGGRF 611
L+ Y TS+ +S+ + CR C GY A RF
Sbjct: 438 LKAYITSYTAKSISV-CRESCGGHGYAAVNRF 468
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 232 VCHYHGKIHPWHNQSKEP 179
VCHY+ +HP HN+ K+P
Sbjct: 242 VCHYN--VHPIHNELKDP 257
>05_06_0097 + 25548272-25548664
Length = 130
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 373 RHAQADGSEDRTRHQDKPHGRGDDA 299
+H + D R RHQ++ HG DDA
Sbjct: 16 QHLRRDDDARRRRHQEQQHGGVDDA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,737,776
Number of Sequences: 37544
Number of extensions: 465836
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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