Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4b06
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   457   e-129
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...   457   e-129
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   457   e-129
Z82053-6|CAB04832.1|  106|Caenorhabditis elegans Hypothetical pr...    91   1e-18
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    83   1e-16
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    78   6e-15
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    49   4e-06
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    39   0.003
AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  457 bits (1127), Expect = e-129
 Identities = 221/241 (91%), Positives = 236/241 (97%)
 Frame = +1

Query: 1   QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 180
           Q+RFN   D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 187 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 246

Query: 181 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 360
           APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 247 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 306

Query: 361 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 540
           LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 307 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 366

Query: 541 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLT 720
           NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLT
Sbjct: 367 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLT 426

Query: 721 E 723
           E
Sbjct: 427 E 427


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score =  457 bits (1127), Expect = e-129
 Identities = 221/241 (91%), Positives = 236/241 (97%)
 Frame = +1

Query: 1   QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 180
           Q+RFN   D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 179 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 238

Query: 181 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 360
           APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 239 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 298

Query: 361 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 540
           LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 299 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 358

Query: 541 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLT 720
           NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLT
Sbjct: 359 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLT 418

Query: 721 E 723
           E
Sbjct: 419 E 419


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  457 bits (1127), Expect = e-129
 Identities = 221/241 (91%), Positives = 236/241 (97%)
 Frame = +1

Query: 1   QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 180
           Q+RFN   D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 214 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 273

Query: 181 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 360
           APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 274 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 333

Query: 361 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 540
           LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 334 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 393

Query: 541 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLT 720
           NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLT
Sbjct: 394 NVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLT 453

Query: 721 E 723
           E
Sbjct: 454 E 454


>Z82053-6|CAB04832.1|  106|Caenorhabditis elegans Hypothetical
           protein T26E3.7 protein.
          Length = 106

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/50 (80%), Positives = 48/50 (96%)
 Frame = +1

Query: 121 INYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 270
           ++YTI+VSATASDAAPL++LAPYSGCA+GE F DNGKHALII+DDLSK+A
Sbjct: 1   MDYTIVVSATASDAAPLKFLAPYSGCAIGEHFLDNGKHALIIFDDLSKKA 50


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
 Frame = +1

Query: 49  IYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN- 225
           ++ A+G    T     +   + G+++   +    A+D    + + P       EFF  + 
Sbjct: 222 VFAAMGVNMETARFFKQDFEECGSMDNVCLFLNLANDPTIERIITPRIALTAAEFFAYHC 281

Query: 226 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGS 405
           GKH L++  D+S  A A R++S      PGR  +PG ++   + + ERA ++  +   GS
Sbjct: 282 GKHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKGR--EGS 339

Query: 406 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT 585
           +T +P++     D++  IP     IT+GQI+++ +L  + I P I+V  S+SR+  +A  
Sbjct: 340 ITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSAVG 399

Query: 586 KAM 594
           + M
Sbjct: 400 EGM 402


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 1/190 (0%)
 Frame = +1

Query: 28  EKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMG 207
           E+     ++ A+G    T     +   + G++    +    A+D    + + P       
Sbjct: 203 EQTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTSA 262

Query: 208 EFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS 384
           EF      KH L++  D+S  A A R++S      PGR  +PG ++   + + ERA ++ 
Sbjct: 263 EFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE 322

Query: 385 DKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 564
            +   GS+T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR
Sbjct: 323 GR--DGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSR 380

Query: 565 VGSAAQTKAM 594
           +  +A  + M
Sbjct: 381 LMKSAIGEGM 390


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 12/183 (6%)
 Frame = +1

Query: 49  IYVAIGQKRSTVAQIVKRLTD---------AGAINYTIIVSATASDAAPLQYLAPYSGCA 201
           IYV  G++ + ++++++   +            +  T +V+ T++     +  + Y+G  
Sbjct: 262 IYVGCGERGNEMSEVLRDFPELTMEVEGVTTSIMKRTALVANTSNMPVAAREASIYTGIT 321

Query: 202 MGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK- 378
           + E+FRD G +  ++ D  S+ A A R++S  L   P    YP  +    +   ERA + 
Sbjct: 322 LAEYFRDMGLNVAMMADSTSRWAEALREISGRLGEMPADSGYPAYLAARLASFYERAGRV 381

Query: 379 --MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL 552
             +      GS+T +  +    GD +  + +  + I      L+ +L  +   P+IN  +
Sbjct: 382 KCLGSPEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 441

Query: 553 SVS 561
           S S
Sbjct: 442 SYS 444


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
 Frame = +1

Query: 190 SGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 366
           +G  + E+FRD  G+  L+  D++ +   A  ++S LL R P    Y   +      + E
Sbjct: 294 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQE 353

Query: 367 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 546
           R          GS+T++  I   A D++   P    +  D    L   +    I PA++ 
Sbjct: 354 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDP 409

Query: 547 GLSVSRV 567
             S SR+
Sbjct: 410 LDSTSRI 416


>AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical
           protein B0238.7 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 169 LQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQM 288
           + Y   Y  C M + F+ NG+  L IYDD++K +  Y+Q+
Sbjct: 526 MYYKIDYPTCEMSDNFQ-NGR--LRIYDDINKNSKKYQQI 562


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 69  EEVYCSSNCEEI--D*CWCHQLHNHRVCHRFRCCSPAIPGSLLWLCHG 206
           E+ Y     + +  D  W   +  H++C RFRC S  +    L L  G
Sbjct: 706 EKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSG 753


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 69  EEVYCSSNCEEI--D*CWCHQLHNHRVCHRFRCCSPAIPGSLLWLCHG 206
           E+ Y     + +  D  W   +  H++C RFRC S  +    L L  G
Sbjct: 706 EKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSG 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,761
Number of Sequences: 27780
Number of extensions: 351951
Number of successful extensions: 930
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)