Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a24
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   142   4e-35
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   140   1e-34
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.3  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   3.0  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   6.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.0  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  142 bits (343), Expect = 4e-35
 Identities = 62/91 (68%), Positives = 76/91 (83%)
 Frame = +3

Query: 3   LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
           LTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+
Sbjct: 245 LTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLS 304

Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 275
             FVKL+SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 305 PQFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  140 bits (339), Expect = 1e-34
 Identities = 61/91 (67%), Positives = 76/91 (83%)
 Frame = +3

Query: 3   LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
           LTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+DF GD+HSSIFDA+AGI L+
Sbjct: 245 LTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLS 304

Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 275
             FVKL+SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 305 PQFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 116 HNLIFSIPE---NALQRTFSCLLDLLLDGF 36
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 171 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 263
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -1

Query: 305 LTFIHLIKSLIFRLNVLDEINDS---AGITIFIVVPTDQLHKVVIQRNSSGSIKD 150
           + F H I+SL+F L+  +E+  S   +G   +++      +  ++Q+  SGS+ D
Sbjct: 502 IPFAHAIESLLFSLDEENELQVSCAASGTLNYLIRHRLFSYSTLVQKGFSGSVFD 556


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 GISLNDNFVKLISWYDNEYGYSSRVIDLI 254
           G+ L    VK I  Y  + GYSS V+D +
Sbjct: 97  GLKLGVLLVKEIIQYSEKLGYSSMVLDTL 125


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 237 CWNNHIHCRTN*SASQSCHSKKFQRQHQRLKSVNHQ 130
           C  ++I C    ++++  HS+  +  HQ+   +NHQ
Sbjct: 92  CLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQ 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,050
Number of Sequences: 5004
Number of extensions: 35589
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)