Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4a24
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 137 4e-33
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 136 8e-33
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 136 1e-32
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 128 3e-30
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 124 6e-29
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 73 2e-13
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 71 6e-13
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 4.0
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 27 9.1
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 27 9.1
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 27 9.1
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 137 bits (332), Expect = 4e-33
Identities = 62/87 (71%), Positives = 76/87 (87%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPASY+ IK +KE +EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LN
Sbjct: 295 LTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALN 354
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYI 263
DNFVKL+SWYDNE+GYSSRV+DLI+++
Sbjct: 355 DNFVKLVSWYDNEWGYSSRVVDLIRHM 381
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 136 bits (330), Expect = 8e-33
Identities = 60/87 (68%), Positives = 77/87 (88%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVR+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LN
Sbjct: 270 LTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALN 329
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYI 263
DNFVKL++WYDNE+GYS+RVIDLI+++
Sbjct: 330 DNFVKLVAWYDNEWGYSNRVIDLIRHM 356
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 136 bits (329), Expect = 1e-32
Identities = 63/89 (70%), Positives = 76/89 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPASY+ IK +KE AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+
Sbjct: 266 LTVRLEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALS 325
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQS 269
D FVKL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 326 DTFVKLVSWYDNEWGYSTRVIDLIRHMHS 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 128 bits (309), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT RL K ASYE +K +KEA+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+
Sbjct: 322 LTCRLEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLS 381
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYI 263
+F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 382 SSFMKLVSWYDNEWGYSNRVLDLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 124 bits (298), Expect = 6e-29
Identities = 54/87 (62%), Positives = 73/87 (83%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT R+ K ASY+ +K +K A+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+
Sbjct: 381 LTCRIEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLS 440
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYI 263
+F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 441 SSFMKLVSWYDNEWGYSNRVLDLIAHM 467
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +3
Query: 6 TVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLND 185
TV+ G A + + ++AA GPL GIL + +VS DF SS DA+ + + D
Sbjct: 327 TVKTGITA--DDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGD 384
Query: 186 NFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
+ VK+++WYDNE+GYS RV+DL + SK
Sbjct: 385 DMVKVVAWYDNEWGYSQRVVDLAHLVASK 413
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
L V++ K E + Q +++A LKGIL + +VS DF S DA+ + +
Sbjct: 311 LVVQVSKKTLAEEVNQAFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMG 370
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
D+ VK+I+WYDNE+GYS RV+DL + ++
Sbjct: 371 DDMVKVIAWYDNEWGYSQRVVDLADIVANQ 400
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 223 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 125
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 141 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD*TLDQMYECKDIFQH 320
H +I + AG+S+ +NFV +++ + R+ L D T+ + + F H
Sbjct: 470 HDTILEFIAGLSIEENFVAILNGQCSTSDLPKRIYRLSLQNSKDDITIP---DATERFSH 526
Query: 321 VR 326
VR
Sbjct: 527 VR 528
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 141 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKY 260
H IFD S +NF+ + + ++ +G ++ L+ Y
Sbjct: 491 HDVIFDLIISKSAEENFITVFGYQNHAFGPQDKIRRLVHY 530
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 141 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 245
H + D +S +NFV +++ D GYS + +
Sbjct: 449 HDMVLDLICSLSSEENFVTILNGCDLSQGYSLKYV 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,699
Number of Sequences: 37544
Number of extensions: 195354
Number of successful extensions: 447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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