Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4a24
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 142 2e-34
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 142 2e-34
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 142 2e-34
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 140 6e-34
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 140 6e-34
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 137 4e-33
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 137 4e-33
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 137 4e-33
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 137 4e-33
AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical... 29 2.7
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 28 3.5
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 28 4.7
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 4.7
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 4.7
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 4.7
U97405-3|AAB53008.1| 192|Caenorhabditis elegans Hypothetical pr... 27 6.2
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 142 bits (343), Expect = 2e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN
Sbjct: 251 LTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
NFVKL+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 311 PNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 142 bits (343), Expect = 2e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN
Sbjct: 251 LTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
NFVKL+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 311 PNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 142 bits (343), Expect = 2e-34
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+DF+ D HSSIFDA A ISLN
Sbjct: 251 LTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
NFVKL+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 311 PNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 140 bits (339), Expect = 6e-34
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+DF+ D HSSIFD A ISLN
Sbjct: 251 LTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
NFVKL+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 311 PNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 140 bits (339), Expect = 6e-34
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+DF+ D HSSIFD A ISLN
Sbjct: 251 LTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
NFVKL+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 311 PNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 137 bits (332), Expect = 4e-33
Identities = 62/90 (68%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN
Sbjct: 251 LTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
+FVKL+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 311 PHFVKLVSWYDNEFGYSNRVVDLISYIATK 340
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 137 bits (332), Expect = 4e-33
Identities = 62/90 (68%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN
Sbjct: 251 LTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
+FVKL+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 311 PHFVKLVSWYDNEFGYSNRVVDLISYIATK 340
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 137 bits (332), Expect = 4e-33
Identities = 62/90 (68%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN
Sbjct: 251 LTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
+FVKL+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 311 PHFVKLVSWYDNEFGYSNRVVDLISYIATK 340
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 137 bits (332), Expect = 4e-33
Identities = 62/90 (68%), Positives = 77/90 (85%)
Frame = +3
Query: 3 LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLN 182
LT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+DF+ D++SSIFDA A ISLN
Sbjct: 251 LTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLN 310
Query: 183 DNFVKLISWYDNEYGYSSRVIDLIKYIQSK 272
+FVKL+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 311 PHFVKLVSWYDNEFGYSNRVVDLISYIATK 340
>AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical
protein Y71H2AM.3 protein.
Length = 483
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 9 VRLGKPASYEAIKQKVKEAAEGPL 80
+R+G P + EA+ ++ KEAA GP+
Sbjct: 69 IRIGAPPTPEALIKREKEAANGPM 92
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 33 YEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLND 185
Y Q +KE EG LK G TE++ + S + + S+I D A + L +
Sbjct: 717 YSKCSQYIKELEEGKLKAQPGCTEEETLESIILREL-STIRDHAGQVCLRN 766
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 477 FCDFVKYLNIANHFYKYFL 421
FCD + +L IA + Y+YF+
Sbjct: 64 FCDLIVFLTIAQNRYRYFI 82
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 48 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 134
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 48 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 134
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1412 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1440
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 48 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 134
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>U97405-3|AAB53008.1| 192|Caenorhabditis elegans Hypothetical
protein T09B4.6 protein.
Length = 192
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 65 CLLDLLLDGFIACRFSKTNS 6
CL+ L L GFI C F K++S
Sbjct: 138 CLIALFLIGFITCEFIKSSS 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,860
Number of Sequences: 27780
Number of extensions: 193817
Number of successful extensions: 472
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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