Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4a19
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 35 0.013
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 32 0.092
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 31 0.16
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 29 0.86
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.6
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 3.5
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 27 3.5
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 4.6
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 26 4.6
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 26 6.1
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 6.1
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 34.7 bits (76), Expect = 0.013
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Frame = +1
Query: 187 QLEKY-DLAASQT-LRAALTKAEAAVPGLNYDLVAGIMRRADIPV--NMNESLLRLQGSL 354
+L+KY DL ++ RAA+TK E L + M + + + + LQ S
Sbjct: 153 ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ 212
Query: 355 TDSECTDLRLNRTEEAFQELNKKSAALKKILSRIPDEITDRKTFLETIKEIA 510
D DL+ ++ E A ++N KSA + ILS + D K +E EIA
Sbjct: 213 LDH---DLQASQNESAGLDVNAKSAEVNAILSELDDA---NKIIVELQAEIA 258
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 31.9 bits (69), Expect = 0.092
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +1
Query: 415 NKKSAALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSTYTPGPGKQVLEQR 594
N+ A LK+ +S + + D+K + I + SA++ L DA V++YT + +EQ
Sbjct: 1529 NQYQAILKRYVSLLKNNAIDQKVVVRLITAVVSALRPLDDA---VASYT--NSEMNIEQF 1583
Query: 595 KREFVKYSKRFSTTLKEYFKEGQANAVFVSALYLIH 702
+ K S +E F E N F + + +H
Sbjct: 1584 DGQKKKCVLASSLPSEERFTEVLTNDFFPTLMLYLH 1619
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 31.1 bits (67), Expect = 0.16
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 418 KKSAALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSTYTP-GPGKQVLEQR 594
+KS ++K+L + I RKTFL+ ++E A++ ++EVS P P ++VL Q
Sbjct: 1676 EKSIRMEKLLGLVETSII-RKTFLQHMEEKKKALENPFILLSEVSEILPETPIQEVLRQH 1734
Query: 595 KRE 603
+
Sbjct: 1735 NAD 1737
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 75 FINFLDKLK-YLNYHNDNGR*IACDFFGITSFNSPC 179
F +FL+K + Y+NY +D+ + + F + S +SPC
Sbjct: 119 FYDFLEKDESYINYLDDDSKLLFARVFALCSSSSPC 154
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 211 ASQTLRAALTKAEAAVPGLNYDLVAGIMRRADIPVNMNESLLRLQGSLTDSECTDLRLNR 390
+ +L + + E+ + L+ + + RAD+ +NE + L+ D + L +
Sbjct: 414 SKDSLTSIVGDLESKIKSLHESVSSLDTERADLLAKINEKIESLELEKHDQQKKRLTYSE 473
Query: 391 TEEAFQELNKK-SAALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAV 540
QELN++ + L+KIL D ++ + +E A+K++ V
Sbjct: 474 LFHKTQELNEELQSCLQKILEASADRNESKQDAKK--REALYALKRIYPEV 522
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 253 AVPGLNYDLVAGIMRRADIPVNMNESLLRLQGSLTDSECTDLRL----NRTEEAFQELNK 420
A+ YD +G R +I M E L +L G D+ D+++ NR + L +
Sbjct: 295 AIGTKRYDAQSGAER--EIQRTMLELLNQLDGF--DTSQRDIKVIMATNRISDLDPALIR 350
Query: 421 KSAALKKILSRIPDEITDRKTF 486
+KIL PDE T RK F
Sbjct: 351 PGRIDRKILFENPDEATKRKIF 372
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 409 ELNKKSAALKK-----ILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEV 549
E NK+ ++K + SR P+E+ + + +K I ++ KLL +EV
Sbjct: 175 EYNKEQEVIRKKYLIGLASRTPEEVAEEEALFIELKRIETSQAKLLSDRDEV 226
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 319 MNESLLRLQGSLTDSECTDLRLNRTEEAFQELNKKSAALKKILSRIPDEIT 471
+ E+ RL G +D L +T E + K ALK ILS+I I+
Sbjct: 187 LEEAKKRLAGIPSDEVALTQALPQTFEIIPPNDNKGVALKNILSKIYPSIS 237
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 460 DEITDRKTFLETIKEIASAIKKLLDAVNEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTL 639
D + R +E +IA +L +++ PGPG+ L+QR ++ K + + L
Sbjct: 22 DSLDKRSDSVEV--KIAKLDAQLSVFQQKIANTRPGPGQTALKQRAMNVLRQKKIYESQL 79
Query: 640 KE 645
++
Sbjct: 80 QQ 81
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 463 EITDRKTFLETIKEIASAIKKLLD 534
+ITD +T L T +++ SA+K L D
Sbjct: 28 DITDPRTLLSTSQDLNSAVKTLED 51
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 397 EAFQELNKKSAALKKILSRIPDEITD 474
EAFQ++ KS +K+L + DE+ D
Sbjct: 353 EAFQKMKLKSVFAEKMLLELKDELHD 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,479
Number of Sequences: 5004
Number of extensions: 58426
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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