Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4a15
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 37 0.011
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.058
02_04_0382 - 22501041-22501279,22501717-22501810 30 0.95
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.3
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.7
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 28 5.1
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 28 5.1
08_02_1289 - 25923916-25924586,25925148-25926630 27 6.7
04_03_0904 + 20717005-20718087 27 6.7
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 6.7
09_02_0417 - 8915604-8916779,8916863-8917270 27 8.8
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 36.7 bits (81), Expect = 0.011
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Frame = +2
Query: 110 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 274
SN D GF G PG P+ G P Y P P PP
Sbjct: 11 SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70
Query: 275 DYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 379
Y P+ GY P GAY PP G +P + P +PG
Sbjct: 71 GYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 230 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 388
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 275 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 391
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 248 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 364
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 236 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 376
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 181 RSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFYMITSY 26
++ST +SG T PRK + V + ++D+ H ++H+ +Y
Sbjct: 154 KASTSKKLSGKTKTNPRKEPEDPNCSHWHVIEEKNTDDDEHADYHYTRFANY 205
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 27.9 bits (59), Expect = 5.1
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = -1
Query: 427 YFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRA 248
YF I F+ + + PT + + + + L V+C+ ++ V +R +I+G DV+A
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136
Query: 247 VVNRFVAVSWPLGSVVGPVYVRRSSTYWHVSGLTDYGPRKARI-RVRDENLSVGHSQQSE 71
V L G +Y R + +S L YG I V E LS+ + ++
Sbjct: 137 QVT--------LNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTAAATD 188
Query: 70 DENHEE 53
EN+ +
Sbjct: 189 AENNRQ 194
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 502 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 353
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 263 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 376
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 316 RCILRGPSPR-PTLLQAYPFPWCSRW 390
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 251 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 370
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,848
Number of Sequences: 37544
Number of extensions: 335543
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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