Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a11
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    29   0.96 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.7  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.1  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    26   5.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   8.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.9  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   8.9  

>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 130 VKYFTSFLLGQEHSSSDARRMIKFDGVSTRVVCFGGG 20
           V +  SFL     SS D ++ +KFD +   V C G G
Sbjct: 211 VNHDASFLPNFHLSSPDGKKFLKFDRILADVPCSGDG 247


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 449 TIFHSNSTRLPTQAKV---APKLKDLE*LMPKNEQLLESMYVTKYLYF 315
           ++F SNST LP+  K+   APKL+    L+  N   L    +  Y  F
Sbjct: 286 SLFFSNSTPLPSSLKIKKEAPKLETHTILVSDNSGSLTKQDILSYFAF 333


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 575 DMRGYPHVDNFLRKIYPVIILGKSSLGWDLKFMKANWR 688
           D+    H+ ++LR ++P  ++GK +   D   +++N+R
Sbjct: 811 DLEMDSHLQDYLRSVFPSSVMGKENASED-TILESNFR 847


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/59 (22%), Positives = 22/59 (37%)
 Frame = +1

Query: 421 RRVELEWKMVQTSSRCGYRMEQRTTPTETHYAPSTSGCYTNRNPCKKFRLPRHARIPTR 597
           RR+ L+W + +  S    R+  R           TS C+  ++   +  L      P R
Sbjct: 200 RRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHLHRMCLVNRGNAPVR 258


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 209 VLEKGVYIIHADEELKTPD----LSPSTDTEKNTSKDNVKNKGTWLHT 340
           + E  + + ++  +L +PD    L PST    NT KDN++ +    H+
Sbjct: 773 IAENVIVLKNSTAQLVSPDSIQELVPSTFFSSNTKKDNIEEENLEPHS 820


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/89 (20%), Positives = 38/89 (42%)
 Frame = +2

Query: 110 KTSEVFNILCTCDRIIRSDSI*RNMAKNKEKTAVLEKGVYIIHADEELKTPDLSPSTDTE 289
           K+S+VF+ L     + +S          +  T +L++      ++   + P LS S    
Sbjct: 7   KSSQVFDFLADRLSVRKSRRFWETQENLESSTPLLQEPQQSYRSNSFNELPPLSRSVTFA 66

Query: 290 KNTSKDNVKNKGTWLHTSTPTVVHFLALI 376
           +N   +     GT+     PT ++ L+++
Sbjct: 67  ENEQPNEAVKLGTFEGCFIPTTLNVLSIL 95


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 619 LPSDNSWQVISGLGLEIYEGQLASSF 696
           +PSDN  +V+     E ++  LASSF
Sbjct: 381 MPSDNYARVVESSTAEFFDPSLASSF 406


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +2

Query: 50  YSIKLDHSSRI*RTMFLSQ*KTSEVFNILCTCDRIIRSDSI*RNMAKNKEKTAVLEKGVY 229
           Y +  D SS I + M  S+ K   + NIL +    +  + +  N  KN + +A L++ + 
Sbjct: 315 YGLPPDFSSVIFQPMAKSEVK---IKNILLSKYAYLAQNPVGNNKVKNVDSSAGLDESMA 371

Query: 230 IIHADEE 250
            ++ DEE
Sbjct: 372 DLNLDEE 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,772
Number of Sequences: 5004
Number of extensions: 60731
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)