Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a11
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584...    30   1.7  
10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243     28   7.1  
01_04_0056 + 15476868-15476896,15477581-15478259                       28   7.1  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    28   9.3  
02_05_0931 - 32812944-32813363,32814296-32814364,32814466-328145...    28   9.3  
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     28   9.3  

>04_01_0450 -
           5840015-5840055,5840635-5840977,5841326-5841537,
           5842381-5842477
          Length = 230

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 411 LRGETGGVGMENGSNQQSLWLSHGAADNSYRDS 509
           LR   GG   +  S+++ +W  HGA    +RDS
Sbjct: 17  LRSGQGGDASDTDSDEEQMWHGHGAWGEEHRDS 49


>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
          Length = 724

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +2

Query: 119 EVFNILCTCDRIIRSDSI*RNMAKNKEKTAVLEKGVYIIHAD-----EELKTPDLSP 274
           + +  + T DR IRS ++  NMA  + +   +   V  + AD     +E+  PD+SP
Sbjct: 420 KAWRAMVTTDRFIRSHAVHANMAARRPRIRFVMDPVGGVPADIDRHTDEIHEPDISP 476


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 684 QLAFINFKSQPRDDLPRIITG 622
           +L FI  K +PR+DLPR++ G
Sbjct: 168 RLDFIGSKFRPREDLPRLLRG 188


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 394 LGATLACVGRRVELEWKMVQTSSRCGYRMEQRTTPTETHYAPSTSGCYTNRNPCKKFRLP 573
           +G  +   G+R E+   +V  S  CG R    +     H   S   C+ + + C  +RL 
Sbjct: 108 MGIAMVSCGQRGEMVAAIVAVS--CGQRGRDGSNNGWQHELESPDSCWAHPSICLFYRLA 165

Query: 574 RHARIPTRGQLFKENL 621
               +P+ G   +E L
Sbjct: 166 CSDLVPSSGLCTQELL 181


>02_05_0931 -
           32812944-32813363,32814296-32814364,32814466-32814572,
           32816676-32816718
          Length = 212

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 393 FGGYFGLRGETGGVG-MENGSNQQ 461
           F G+FG     GGVG M NGS Q+
Sbjct: 184 FSGHFGQASAQGGVGSMHNGSQQR 207


>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 260 PDLSPST---DTEKNTSKDNVKNKGTWLHTS 343
           P +SPST    T  N S DN  ++GT +H S
Sbjct: 265 PPVSPSTLSTSTGLNPSPDNANSRGTGIHNS 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,907
Number of Sequences: 37544
Number of extensions: 381624
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)