Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4a11
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical ... 31 0.89
Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein. 29 4.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.8
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 28 6.3
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 28 6.3
>AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical
protein Y119C1B.3 protein.
Length = 450
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -3
Query: 330 QVPLFFTLSFEVFFSVSVLGDKSGVFNSSSACIM*TPFSRTAVFSLFFAMFLQIESLLII 151
Q P T+S V++ D +F F ++++F A LQ L++
Sbjct: 219 QFPFVLTVSRARKMRVAITNDYEQLFARQRPRSCFKAFYDVDIWAIFLANVLQDVPFLLV 278
Query: 150 R---SQVHNMLNTSLVFYWDRNIVL 85
R VHN++ +++F++ +N+++
Sbjct: 279 RLYLMTVHNLITYTMIFFFFKNMLI 303
>Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical
protein F57G8.5 protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 590 PHVDNFLRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCS 751
P + +RK+ +I+ + L D+KF+ N ++G+V E++A+ S
Sbjct: 108 PFTETMIRKVALAMIVIRWGLATDVKFLYENAVTPVTIGLVTAIGEIIAITIAS 161
>Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical
protein K08H10.1 protein.
Length = 733
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 185 AKNKEKTAVLEKGVYIIHADEELK--TPDLSPSTDTEKNTSKDNVKNKGTWLHTS 343
AK+K K+ + G I A + +K D++ S SKDNV+NK + + S
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNS 604
>AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein.
Length = 733
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 185 AKNKEKTAVLEKGVYIIHADEELK--TPDLSPSTDTEKNTSKDNVKNKGTWLHTS 343
AK+K K+ + G I A + +K D++ S SKDNV+NK + + S
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNS 604
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 396 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 494
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 168 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 200
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 396 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 494
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 189 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 221
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 396 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 494
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 174 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 206
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 758 STASMSREREPQPSRVPHRG*KLDANWPS*ISSPNPEM 645
ST+ + R R P P+++P R + D+ P S +P+M
Sbjct: 516 STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGSESPKM 553
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 758 STASMSREREPQPSRVPHRG*KLDANWPS*ISSPNPEM 645
ST+ + R R P P+++P R + D+ P S +P+M
Sbjct: 516 STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGSESPKM 553
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,163
Number of Sequences: 27780
Number of extensions: 337807
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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