Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a09
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0146 - 13389982-13390254                                         65   3e-11
08_01_0858 + 8418100-8418372                                           63   1e-10
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037...    30   0.77 
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888...    28   3.1  
04_03_0760 + 19334338-19334690,19337321-19338008                       27   7.2  

>10_07_0146 - 13389982-13390254
          Length = 90

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 30/77 (38%), Positives = 48/77 (62%)
 Frame = +1

Query: 100 MSGAIPKIQILSLYKLLLRESQKFPNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFG 279
           M+ A  + + LSL++ LLR +++F +YN R YA RR  DAF++N+ + D       F  G
Sbjct: 1   MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADG 60

Query: 280 KENLNVIRRQAAIGNMY 330
           K+ L V +RQA + ++Y
Sbjct: 61  KKQLEVAKRQAVVYSLY 77


>08_01_0858 + 8418100-8418372
          Length = 90

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 29/77 (37%), Positives = 47/77 (61%)
 Frame = +1

Query: 100 MSGAIPKIQILSLYKLLLRESQKFPNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFG 279
           M+ A  + + LSL++ LLR +++F +YN R Y  RR  DAF++N+ + D       F  G
Sbjct: 1   MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTAAAAAAFADG 60

Query: 280 KENLNVIRRQAAIGNMY 330
           K+ L V +RQA + ++Y
Sbjct: 61  KKQLEVAKRQAVVYSLY 77


>03_05_0109 -
           20903013-20903062,20903406-20903538,20903631-20903726,
           20904011-20904168,20904278-20904392,20904486-20904539,
           20904818-20904925,20905406-20905495,20905907-20906086,
           20906204-20906516,20906619-20906794
          Length = 490

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 112 IPKIQILSLYKLLLRESQKFPNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFGK 282
           +P +Q L      L+  QK   YN +  ALR    A  D K  +  KI K +FE  K
Sbjct: 179 VPMVQQLEAEVNSLK--QKLVEYNKKQLALRANATAINDKKEETHRKIAKSDFELVK 233


>12_02_0768 -
           22988119-22988223,22988337-22988558,22988645-22988810,
           22989176-22989181,22989281-22989453,22989737-22989928,
           22990034-22990211,22990302-22990444,22990666-22990755,
           22990869-22990991,22991391-22991568,22992213-22992442,
           22992557-22992616,22992731-22992798,22992908-22992953
          Length = 659

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 172 PNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFGKENLNVIRRQAAIGNMY 330
           P Y FRA     + D + ++ +++  K   +E+E   +    I R A  G++Y
Sbjct: 282 PYYGFRAMRAGLVADTYLESMSITHFKKKYEEYELKGDEQEQIDRLAEDGDIY 334


>04_03_0760 + 19334338-19334690,19337321-19338008
          Length = 346

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 226 DNKNVSDVKIVKKEFEFGKENLNVIRRQAAIGNMYKTEKLVIENL 360
           D++    ++I + EFE      NV  R++A G     E+L++ENL
Sbjct: 152 DDREAEAIRIAE-EFEKQVLTFNVAVRKSAAGAARAEERLMVENL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,442
Number of Sequences: 37544
Number of extensions: 165180
Number of successful extensions: 285
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)