Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a09
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF016688-2|AAB66078.1|  649|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 174 RELLGFSEKQFIER*YLYFRYRARHFALLFDKLIKNY 64
           R +L   EKQFI    +    R  HF+ L D ++KNY
Sbjct: 198 RAILDMDEKQFINIRLVVLEMR-NHFSTLHDMIMKNY 233


>Z78062-2|CAB01499.2|  689|Caenorhabditis elegans Hypothetical
           protein F16D3.2 protein.
          Length = 689

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 130 LSLYKLLLRESQKFPNYNFRAYALRRIRDAFKD-NKNVSDVKIVK--KEFEFGKENLNVI 300
           LSL  LLLR   KF N   R + L +   AF+   +++SD K  K  K    G  NL   
Sbjct: 50  LSLSDLLLRHPDKFINCGNRNWRLNQNNHAFQQLAESISDKKSGKGGKRSARGGSNLPSF 109

Query: 301 RRQAAIG 321
            R  + G
Sbjct: 110 NRARSGG 116


>AF016688-2|AAB66078.1|  649|Caenorhabditis elegans Hypothetical
           protein F18A12.6 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 154 RESQKFPNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFGKENLNVIRRQ 309
           RE QK  + N  +   + + D F D K +    ++ K+++  K NLN + RQ
Sbjct: 159 RELQKISDLN--SIPPQALLDIFSDIKKIGAWPVLDKDWDGSKFNLNEMLRQ 208


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical protein
            C10C6.6 protein.
          Length = 1178

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 439  ILFISQMYIIHYRCFIIIYNYKHEATAD 356
            +L ++  +I+H+ C + I    HEA  +
Sbjct: 1036 LLTVTLQFIVHFSCLLYIVGLAHEANTE 1063


>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical
           protein T05A12.4b protein.
          Length = 975

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 81  KLIKNYNILIKGNTQ*YLSYEL 16
           KLIKN    IK N + YLSY L
Sbjct: 724 KLIKNKKTTIKANFREYLSYSL 745


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
           protein T05A12.4a protein.
          Length = 1622

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 81  KLIKNYNILIKGNTQ*YLSYEL 16
           KLIKN    IK N + YLSY L
Sbjct: 724 KLIKNKKTTIKANFREYLSYSL 745


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,605,755
Number of Sequences: 27780
Number of extensions: 183501
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)