Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4a01
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical pr...   113   6e-26
Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical
           protein F22D6.4 protein.
          Length = 140

 Score =  113 bits (273), Expect = 6e-26
 Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = +3

Query: 195 TLTNKIEDISTHTGQKWDSDDYRLVRFTNAPKQVNPNWAVNLIAEIPPKEVTE-RVVWCD 371
           T  N   D  THTGQ WD  DYRL RF  + K VNPN A++LI + PP++  + RVV+CD
Sbjct: 33  TKNNAQFDKVTHTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCD 92

Query: 372 GGSGPEGHPRVYINLDKPGDHSCGYCGLRF 461
           GG    GHP+VYINLDKPG H+CGYCG RF
Sbjct: 93  GGHPALGHPKVYINLDKPGVHACGYCGNRF 122


>Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical
           protein D1046.2 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 432 HSCGYCGLRFIKKTG 476
           HSC  CG+ FI KTG
Sbjct: 121 HSCENCGMEFITKTG 135


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
 Frame = +3

Query: 177 TPVLCRTLTNKIE--DISTHTG---QKWDSDDYRLVRFTNAPKQVNP-NWAVNLIAEIPP 338
           TP+LC  +  KIE  D   +TG   +  D      + +     Q++  NWA+N   E+  
Sbjct: 72  TPLLCALMAGKIENADFLANTGADAECHDEQGRNALHWAVVCGQLDSLNWAINKNVEVNA 131

Query: 339 KEVTER-----VVWCDGGSGPEGHPRVYINLDKPG 428
           K+  +R        C     PE    + I L K G
Sbjct: 132 KDQYQRCTPLHYATCSEDIAPEVSQAILITLLKHG 166


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 534 LQIIQVKRLKDDLDSSNFNDQFFL*ILIHSIHMNGHLVYLN*YTLVDDPLGHY-LHHTKQ 358
           L ++ V  L +D DS +   + F    +H    N     L  + LV+    +   +HTK+
Sbjct: 470 LGVLYVDTLLEDEDSGHREAKIFATRFLHDNQNNVQAKLLKVHVLVNGVSRNPDANHTKE 529

Query: 357 LFQLL 343
           LFQLL
Sbjct: 530 LFQLL 534


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 138  IMTSCSKLKMLRSTPVLCRTLTNKIEDISTHTGQKWDSDDY-RLVRFTNAPKQ 293
            ++ SC +   +R+  V+CR L  + +++      +WD + + R+++    P+Q
Sbjct: 2015 VVPSCDRQFTIRNAQVVCRELGLQTQNVYHWLTPRWDYNPHVRILKTYMEPRQ 2067


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -1

Query: 100 RFKYVGTYLQGINLTLKKKSENFV 29
           + K++  ++QG+N+T +KK++ ++
Sbjct: 125 KLKFIKNFVQGMNMTFQKKNQIYI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,025
Number of Sequences: 27780
Number of extensions: 247965
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)