Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p21
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 591 NYXKWY*NXGCSLRNYMNKYV 529
           NY  WY N   +L N +N ++
Sbjct: 204 NYSGWYLNHDYNLENKLNYFI 224


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 522 YKSHIYSYNSARNTLXFNTIXSNY*NHQK--YYSTWN 626
           + ++ Y YN   N    N   +NY N+ K  YY+  N
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 540 SYNSARNTLXFNTIXSNY*NHQKYYSTWNFXST 638
           +Y+S  NTL +  + SN   + K+ +  N  ST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 597 FNNYXKWY*NXGCSLRNYMNKYVICIFN 514
           +NNY   Y N      NY N Y    +N
Sbjct: 327 YNNYNNNYNNYNNYNNNYNNNYKKLYYN 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,621
Number of Sequences: 438
Number of extensions: 1434
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)