Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p20
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   2.1  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   2.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.7  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 184 STVNILRNSELNSTFLLILKMLK*CYIMLYNSMQTFVTKQRILNAK-IILDLIGLTFS 14
           S +  L +S L S   L+LK  +  YI+L+N M     +  I +A  +++ LI L F+
Sbjct: 826 SLIEPLPDSLLKSLADLLLKNSQELYIILFNGMVFTFPRDNISDASAVLIPLIRLVFA 883


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +1

Query: 175 LRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQ 354
           L+ + I+ +L G  P  V    +   +++  +  +H+LL + + + L   EK ++   K+
Sbjct: 78  LQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKE 137

Query: 355 DPIPYVPI 378
             I  +P+
Sbjct: 138 REISEIPV 145


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 145 LNSIQNSVKYLRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSP 300
           L+S+ N +  L    +K+T       ++  +I  +  E+N L   +   FSP
Sbjct: 828 LDSVPNGMHELLLNEVKSTSNQTMQSKIARLIFRVGNEENPLVYPNNATFSP 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,789
Number of Sequences: 5004
Number of extensions: 55709
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)