Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p20
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ100692-1|AAZ08699.1| 118|Homo sapiens immunoglobulin heavy ch... 33 1.1
DQ323994-1|ABC88596.1| 150|Homo sapiens SFPQ protein. 31 4.4
BC000730-1|AAH00730.1| 641|Homo sapiens calpain 6 protein. 31 4.4
AY800242-1|AAV41896.1| 641|Homo sapiens calpain 6 protein. 31 4.4
AL031117-4|CAA19965.1| 641|Homo sapiens calpain 6 protein. 31 4.4
AK123582-1|BAC85651.1| 165|Homo sapiens mRNA. protein. 31 4.4
AK095331-1|BAC04532.1| 151|Homo sapiens protein ( Homo sapiens ... 31 4.4
AJ000388-1|CAA04051.1| 641|Homo sapiens calpain-like protease, ... 31 4.4
AF029232-1|AAB86605.1| 641|Homo sapiens calpamodulin protein. 31 4.4
AF431053-1|AAM46659.1| 143|Homo sapiens anti-pneumococcal antib... 31 5.8
AB063657-1|BAC01285.1| 114|Homo sapiens immunoglobulin heavy ch... 30 7.7
>DQ100692-1|AAZ08699.1| 118|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 118
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 642 RKICCGEDSKSELHPYTNSLETQETPGVHYTSTAW 746
R I +DSK+ L+ NSL+T++T V+Y +TAW
Sbjct: 65 RLIISRDDSKNTLYLQINSLKTEDT-AVYYCATAW 98
>DQ323994-1|ABC88596.1| 150|Homo sapiens SFPQ protein.
Length = 150
Score = 31.1 bits (67), Expect = 4.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 470 AAWISSCLSE---GRPISPLPQSSTRGKMDRGLSIG 372
A W SC S+ GRP P+P+S RG D G G
Sbjct: 62 AVWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPG 97
>BC000730-1|AAH00730.1| 641|Homo sapiens calpain 6 protein.
Length = 641
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 649 YVAEKIQKANYTPIPTRWRHKRLPEFIIR 735
++++ ++K NY +PT ++H R EF++R
Sbjct: 457 FLSKYLKKGNYVLVPTMFQHGRTSEFLLR 485
>AY800242-1|AAV41896.1| 641|Homo sapiens calpain 6 protein.
Length = 641
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 649 YVAEKIQKANYTPIPTRWRHKRLPEFIIR 735
++++ ++K NY +PT ++H R EF++R
Sbjct: 457 FLSKYLKKGNYVLVPTMFQHGRTSEFLLR 485
>AL031117-4|CAA19965.1| 641|Homo sapiens calpain 6 protein.
Length = 641
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 649 YVAEKIQKANYTPIPTRWRHKRLPEFIIR 735
++++ ++K NY +PT ++H R EF++R
Sbjct: 457 FLSKYLKKGNYVLVPTMFQHGRTSEFLLR 485
>AK123582-1|BAC85651.1| 165|Homo sapiens mRNA. protein.
Length = 165
Score = 31.1 bits (67), Expect = 4.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 470 AAWISSCLSE---GRPISPLPQSSTRGKMDRGLSIG 372
A W SC S+ GRP P+P+S RG D G G
Sbjct: 76 AVWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPG 111
>AK095331-1|BAC04532.1| 151|Homo sapiens protein ( Homo sapiens
cDNA FLJ38012 fis, clone CTONG2012554. ).
Length = 151
Score = 31.1 bits (67), Expect = 4.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 470 AAWISSCLSE---GRPISPLPQSSTRGKMDRGLSIG 372
A W SC S+ GRP P+P+S RG D G G
Sbjct: 62 AVWPPSCYSQCPQGRPPHPVPRSPRRGSRDLGKEPG 97
>AJ000388-1|CAA04051.1| 641|Homo sapiens calpain-like protease,
CANPX protein.
Length = 641
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 649 YVAEKIQKANYTPIPTRWRHKRLPEFIIR 735
++++ ++K NY +PT ++H R EF++R
Sbjct: 457 FLSKYLKKGNYVLVPTMFQHGRTSEFLLR 485
>AF029232-1|AAB86605.1| 641|Homo sapiens calpamodulin protein.
Length = 641
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 649 YVAEKIQKANYTPIPTRWRHKRLPEFIIR 735
++++ ++K NY +PT ++H R EF++R
Sbjct: 457 FLSKYLKKGNYVLVPTMFQHGRTSEFLLR 485
>AF431053-1|AAM46659.1| 143|Homo sapiens anti-pneumococcal antibody
1A2 heavy chain variable region protein.
Length = 143
Score = 30.7 bits (66), Expect = 5.8
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 660 EDSKSELHPYTNSLETQETPGVHYTSTAW 746
+DSK+ L+ NSL+T++T V+Y +T+W
Sbjct: 87 DDSKNTLYLQMNSLKTEDT-AVYYCTTSW 114
>AB063657-1|BAC01285.1| 114|Homo sapiens immunoglobulin heavy chain
VHDJ region protein.
Length = 114
Score = 30.3 bits (65), Expect = 7.7
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 660 EDSKSELHPYTNSLETQETPGVHYTSTAW 746
+DSK+ L+ NSL+T++T V+Y +T W
Sbjct: 75 DDSKNTLYLQMNSLKTEDT-AVYYCTTGW 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,531,077
Number of Sequences: 237096
Number of extensions: 1786352
Number of successful extensions: 4157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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