Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p18
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 262 4e-71
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 6.9
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 9.1
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 9.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 9.1
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.1
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 262 bits (641), Expect = 4e-71
Identities = 128/184 (69%), Positives = 149/184 (80%)
Frame = +2
Query: 2 VRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCA 181
VRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF E +VELYAEKV RGLCA
Sbjct: 41 VRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCA 100
Query: 182 IAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 361
+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR RAKSMKF DG MI
Sbjct: 101 VAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMI 160
Query: 362 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 541
HSG P D++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V +PK+E
Sbjct: 161 HSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEP 217
Query: 542 PLEP 553
+P
Sbjct: 218 ITKP 221
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 254 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 409
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 38 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 214
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 215 IG 220
+G
Sbjct: 784 LG 785
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 408
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 6.9
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -3
Query: 352 SIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS*RFGLG--DS 179
S+Y + T+ LA+YN E I+ST S V R LG
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355
Query: 178 AKTTSSHLFS 149
A+ SS LFS
Sbjct: 356 ARMNSSDLFS 365
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 156 FSAYNSTDCSGMLNRFCTTEVSSR 85
+ +Y S+DC G+L+R T+ R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 317 GQRAKSMKFVDGLMIHSGDPCNDYVN 394
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 142 FYRLLWNVESLLYYGSQL 89
FYRL W + +LY SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 216 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 58
+ L L+ A+ ++ S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,394
Number of Sequences: 5004
Number of extensions: 53563
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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