Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p18
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 300 5e-82
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.1
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 28 4.9
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 4.9
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 4.9
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 28 4.9
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 6.4
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 6.4
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 6.4
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 6.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 6.4
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 300 bits (737), Expect = 5e-82
Identities = 140/187 (74%), Positives = 163/187 (87%)
Frame = +2
Query: 2 VRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCA 181
VR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA
Sbjct: 41 VRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCA 100
Query: 182 IAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 361
+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMI
Sbjct: 101 VAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMI 160
Query: 362 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 541
HSG P NDY+ A RHV LRQGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +
Sbjct: 161 HSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVL 220
Query: 542 PLEPTSE 562
P EP S+
Sbjct: 221 PKEPHSQ 227
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 625 SYILSDSGDRLRQRRGREGAHFAGRLEGH 539
+Y+ +GD LR R REG+ F +E H
Sbjct: 27 NYVHLSAGDLLRAERQREGSEFGALIESH 55
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 50 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 169
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 622 YILSDSGDRLRQRRGREGAHFAGRLEGH 539
Y+ +GD LR R R G+ + +EGH
Sbjct: 28 YVHLSAGDLLRAERERAGSEYGALIEGH 55
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 391 QHCYQTCASQARSTRNQGQNHVA 459
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 391 QHCYQTCASQARSTRNQGQNHVA 459
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 391 QHCYQTCASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPRAD 555
Q C Q S +S N + GPA++ RPE P DR + + R D
Sbjct: 113 QSCLQNELSALKSANNAMKTSKN-GPAKEHRPENGKLSPETLDRGKEENQEGRQD 166
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 494 PQPDHILVTEPKDEPVPL---EPTSE 562
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 418 QARSTRNQGQNHVAVGPARQERPEEATTRP--HPGDRAQGRA 537
Q + R Q GP RQ++P++ + +P PG + QG++
Sbjct: 553 QGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 537 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 436
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 537 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 436
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,506,289
Number of Sequences: 27780
Number of extensions: 317058
Number of successful extensions: 1090
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -