Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p17
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    36   0.008
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   4.8  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   4.8  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   6.4  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   6.4  

>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
 Frame = +3

Query: 156 VLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPMPR-DGTPAVKNPEYKCLLRAQ 332
           +LLSN+EFL +LT L Q  +  G+ ++ + +   +  P+   +G+ A        L+RA+
Sbjct: 1   MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQ---KCNPVDEGEGSSA------SVLIRAK 51

Query: 333 S-KSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 428
           S  ++KISTVVE      F  +Y+ + K  + G
Sbjct: 52  SGAAEKISTVVELDYFTDFFQSYAEVCKGQIVG 84


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 179 SSRVNKTFPKSTISRINHNDYEEI*RP 259
           SS  NKT  KSTI  I + D+E    P
Sbjct: 309 SSHGNKTSQKSTIKNIENEDHENTKSP 335


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 90  LLKFQHFRKLLLISKICDYLGH 25
           LL   HF++++++S +CD  G+
Sbjct: 272 LLDIPHFKEVIIMSTVCDRCGY 293


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 388 ENFSTSRCSTTVDIFLLLDCARNRHLYSGFLTAGVPSRGIGLLRPSYLFIVIVI---DPA 218
           E FS+    T  +I  L   A NR+     LT+   +R   L  P+Y  +  +I    P+
Sbjct: 159 ELFSSPSSITANEIARLCQEANNRNYLLQSLTSATDARRAFLNNPNYRLLSAIIFQDGPS 218

Query: 217 NRAF 206
           N AF
Sbjct: 219 NLAF 222


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 FQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLR 326
           FQ   L    T+T    DG +   PRDGTP +  PE+   L+
Sbjct: 102 FQMVSLLKLATITE---DGVTFLSPRDGTPMLLTPEHSISLQ 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,234
Number of Sequences: 5004
Number of extensions: 48601
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)