Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p16
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 50 5e-07
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 36 0.008
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 36 0.008
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.95
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 1.7
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.0
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.0
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 8.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 8.8
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 49.6 bits (113), Expect = 5e-07
Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 335 SLSKELRHFHTSHAVNKIVA-FKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDK 511
SLS + R+FH S A+N + + F++ + + E I +W K GD+ + D + EV++DK
Sbjct: 18 SLSVKQRYFHCS-ALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDK 76
Query: 512 AAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSENDGKPTDVAPDKPVAE 676
A + + + +GI+ ++ + VG+ + V D+E++ K ++ D+ +E
Sbjct: 77 ATMDVEVQDNGILAKVLIEKGSNIPVGKNIA--IVADAEDNLKDLELPKDEASSE 129
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 35.5 bits (78), Expect = 0.008
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Frame = +2
Query: 455 KVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDI-DQTALVGQPLVDIDVQDSEN 631
K+GD ++ D +CE+++DKA + + +G + ++ + + VG+PL + V++ +
Sbjct: 76 KIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLA-VTVENEGD 134
Query: 632 -----DGKPTDVAPDKPVA----EIDAPKTEQNQKI*S--INYSGGEKNRR 751
D D + +P A E AP +E+ K S N SG E+ R
Sbjct: 135 VAAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSGEERGDR 185
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 35.5 bits (78), Expect = 0.008
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 416 EGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQ 595
E I E + +W + G+ V + + I V++DK +T+ G++ T + Q
Sbjct: 52 ESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQ 111
Query: 596 PLVDIDVQDSENDGKPTDVAPDK-PVAEIDAPK 691
+ ID + +G D+ A+ DA K
Sbjct: 112 DIAVIDTSAAPPEGGSAGPKKDEVKTADADAAK 144
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.95
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = -1
Query: 696 SVFGASISATGLSGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVT 517
S F +SI+ SG +S PS S +SI + + + S+S S ++ +
Sbjct: 551 SDFSSSITTIS-SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 516 AALSLCTSQMLSNC*TLSPTLTNHSLM-TTSRIPSPISESLKATI 385
+ S+ +S S+ SPT + SLM ++S I S S L ++I
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSI 654
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 269 IKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDI 412
++ T Q ARN L YK LN ++ AVN I A+ L+ +
Sbjct: 255 LQQTFQEARNTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKV 302
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 724 VNTLNFLVLFRFRSVYFSNRLIR 656
+N+L F VLF F++VY +LI+
Sbjct: 50 MNSLKFCVLFSFKTVYSLLKLIK 72
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/102 (20%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Frame = +2
Query: 416 EGIREVVIKEWFVKVGDNVQQFDN----ICEVQSDKAAVTITSRYDGIITRLYHD---ID 574
+ + ++++ E V G N + F++ + E+++ A + R I L+H +
Sbjct: 8 DDLEKLLVAEQNVPYGKNYESFEDEENYLLELRNANALENLEHR--SIPNDLFHSSQPVG 65
Query: 575 QTALVGQPLVD-IDVQDSENDGKPTDVAPDKPVAEIDAPKTE 697
G + +D+ S+N TD++ D+ + + AP+T+
Sbjct: 66 SPTRNGDDIPSTLDLYSSDNAAIDTDISEDETINQRHAPQTD 107
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/102 (24%), Positives = 44/102 (43%)
Frame = -1
Query: 693 VFGASISATGLSGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVTA 514
V ++ T + +TSV + S + T ++T C T S+ Y+ + S + ++
Sbjct: 522 VTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTST--SVP-YTSTPVTSSNYTISSS 578
Query: 513 ALSLCTSQMLSNC*TLSPTLTNHSLMTTSRIPSPISESLKAT 388
T +NC T + L T++ I SP S S +T
Sbjct: 579 TPVTSTPVTTTNC-----TTSTSVLYTSTPITSPNSTSSSST 615
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 595 LSYKSGLINIMVQSCYDTVVSASDGDSCLVALYFANVVELLNIITDF 455
L+Y S + N++V C +VVS+ + L ++L++ IT F
Sbjct: 1310 LAYASKIENLLVLQCAISVVSSLGHEHISCVLTQGAYIDLISCITKF 1356
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 237 NTDLRTRIDIAMKELRTR 184
NTDLR+R+DI+ +L+ R
Sbjct: 408 NTDLRSRVDISESKLKKR 425
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 599 LVDIDVQDSENDGKPTDVAPDKPVAEIDAPKTEQN 703
L D+D++ ++ + + D D+P+ + + P E N
Sbjct: 4105 LEDMDMEAADENKEEADAEKDEPMQDFEDPLEENN 4139
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 8.8
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 263 RKIKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDIGEGIREVVIK 442
R +V TQS +GSQ+S + E L K H + V + K++ +G R+ V+K
Sbjct: 627 RNYRVLTQSISSGSQISLLNIVVE-LKKASNHPYLFDGVEESWMQKIN--SQGRRDEVLK 683
Query: 443 EWFVKVGDNVQQFDNICEVQSDKAAVTITSR 535
+ G V + ++ D V I S+
Sbjct: 684 GLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQ 714
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 432 TSRIPSPISESLKATILLTA*LVWKCLNSLLKLSF 328
T R+PS I E +TI+ + + K L +L LSF
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLFVLSF 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,446
Number of Sequences: 5004
Number of extensions: 57646
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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