Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p16
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0030 - 11787280-11787393,11787487-11787714,11788828-117889... 63 3e-10
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 45 8e-05
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 42 4e-04
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 42 7e-04
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 40 0.003
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 39 0.004
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 38 0.007
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 36 0.026
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 34 0.11
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 33 0.25
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 33 0.32
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455... 29 3.0
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 5.3
07_01_0231 - 1698244-1700154 28 7.0
>01_03_0030 -
11787280-11787393,11787487-11787714,11788828-11788916,
11789516-11789763,11789858-11790146,11790295-11790454,
11791228-11791404
Length = 434
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +2
Query: 383 KIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLY 562
++V L+ GEGI E + WFV GD V +F +CEVQSDKA + ITSR+ G + +++
Sbjct: 34 ELVDVPLAQTGEGIAECELLRWFVTEGDQVDEFQRLCEVQSDKATIEITSRFKGKVHQIH 93
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +2
Query: 437 IKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYH-DIDQTALVGQPLVDID 613
I W K GD V + +CEV++DKA V + +G + ++ H D + VG+ ++ +
Sbjct: 93 IARWVKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIHGDGAKEIKVGE-IIAVT 151
Query: 614 VQDSENDGKPTDV-APDKPVAEIDAPKTEQNQ 706
V++ E+ GK D AP AE AP + Q
Sbjct: 152 VEEEEDIGKFKDYKAPSS--AESAAPAESKPQ 181
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 42.3 bits (95), Expect = 4e-04
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = +2
Query: 320 TPLNESLS----KELRHFHTSHAVNKIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDN 487
T LN SLS R F +S + + + + E I W K GD V +
Sbjct: 92 TGLNGSLSCGQIASARSFSSSADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEV 151
Query: 488 ICEVQSDKAAVTITSRYDGIITRLYH-DIDQTALVGQPLVDIDVQDSENDGKPTDVAPDK 664
+CEV++DKA V + +G + ++ H D + VG+ ++ + V++ + K D P
Sbjct: 152 LCEVETDKATVEMECMEEGYLAKIIHGDGSKEIKVGE-IIAVTVEEEGDIKKFKDYKPST 210
Query: 665 PVAEI 679
A +
Sbjct: 211 LAAPV 215
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 41.5 bits (93), Expect = 7e-04
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +2
Query: 320 TPLNESLS----KELRHFHTSHAVNKIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDN 487
T LN SLS R F +S + + + + E I W K GD V +
Sbjct: 1595 TGLNGSLSCGQVSSARSFSSSADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEV 1654
Query: 488 ICEVQSDKAAVTITSRYDGIITRLYH-DIDQTALVGQPLVDIDVQDSENDGKPTDVAPDK 664
+CEV++DKA V + +G + ++ H D + VG+ ++ + V++ + K D P
Sbjct: 1655 LCEVETDKATVEMECMEEGYLAKIIHGDGAKEIKVGE-IIAVTVEEEGDLEKFKDYKPST 1713
Query: 665 PVA 673
A
Sbjct: 1714 SAA 1716
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 437 IKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDV 616
I W GD V + D + V+SDKA + + + YDGI+ + ++A VG P+ +
Sbjct: 58 IVSWTAAEGDRVAKGDPVVVVESDKADMDVETFYDGIVAVVLVPAGESAPVGAPIALLAE 117
Query: 617 QDSE 628
+ E
Sbjct: 118 SEEE 121
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +2
Query: 383 KIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLY 562
KI + + + E I W GD V + D + V+SDKA + + + +DGI+ +
Sbjct: 45 KIREIFMPALSSTMTEGKIVSWSAAEGDRVAKGDAVVVVESDKADMDVETFHDGIVAAVL 104
Query: 563 HDIDQTALVGQPLVDIDVQDSEND 634
++A VG P+ + +SE+D
Sbjct: 105 VPAGESAPVGAPIALL--AESEDD 126
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 437 IKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITR-LYHDIDQTALVGQPLVDID 613
I +W + G+ ++ D ICE+++DKA + S +G + + L + + VGQP+ +
Sbjct: 168 IAKWRKQEGEKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVQVGQPIA-VT 226
Query: 614 VQDSEN 631
V+D E+
Sbjct: 227 VEDLED 232
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 36.3 bits (80), Expect = 0.026
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Frame = +2
Query: 410 IGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALV 589
+GE + + + + K GD V+ + I ++++DK + + S G+I + T
Sbjct: 81 MGESVTDGTLANFLKKPGDRVEADEPIAQIETDKVTIDVASPEAGVIEKFIASEGDTVTP 140
Query: 590 GQ--PLVDIDVQDSENDGKPTDVAPDK---PVAEIDAPKTEQ 700
G ++ +E P++ + K P AE PK E+
Sbjct: 141 GTKVAIISKSAAPAETHVAPSEDSTPKETPPKAEETKPKLEE 182
>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +2
Query: 353 RHFHTSHAVNKIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITS 532
RH H + ++ D+ EGIREV++ E F N+Q F+ E +A+ I S
Sbjct: 868 RHLSIIHLAEQHISM---DLTEGIREVLLAESFTGPFPNLQVFETPTETHGGGSAIDIIS 924
Query: 533 RYDGIITRLYHDIDQTALV 589
+ I D +T +V
Sbjct: 925 NW--YIDNFVKDASRTGVV 941
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 383 KIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLY 562
KI + + + E I W GD + + D + V+SDKA + + + +DG + +
Sbjct: 48 KIREIFMPALSSTMTEGKIVSWTASEGDRLAKGDPVVVVESDKADMDVETFHDGFLAAVL 107
Query: 563 HDIDQTALVGQPLVDIDVQDSE 628
++A VG + + + E
Sbjct: 108 VPAGESAPVGSAIALLAESEDE 129
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 356 HFHTSHAVNKIVAFKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSR 535
H V+ +V F +GE I + + + K GD V+ + I ++++DK + + S
Sbjct: 39 HCQLGDLVDAVVPF----MGESITDGTLATFLKKPGDRVEADEPIAQIETDKVTMDVASP 94
Query: 536 YDGIITR 556
GII +
Sbjct: 95 EAGIIEK 101
>02_01_0607 -
4549248-4549290,4550193-4550337,4550438-4551185,
4551504-4551980,4552066-4552374
Length = 573
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 290 ARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKL 403
A +GS +S PL+E++S RH +TS V I F +
Sbjct: 440 AIDGSHISVVVPLDETISHTCRHGYTSQNVLAICDFDM 477
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3
Query: 544 TVVSASDGDSCLVALYFANVVELLNIITDFDEPFLDDDFSYPFTDIRKLESDD 386
T+ SA D DS +++ AN VE + I F+D D S P +IR + DD
Sbjct: 407 TIASAGD-DSNGLSMSQANAVEPQDCIAA--NGFMDKDISSPLDEIRSEKPDD 456
>07_01_0231 - 1698244-1700154
Length = 636
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 293 RNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFK-LSDIGEGIREVVIKEW 448
+N L Y NESL K L +FH +N FK + DI G+ + +EW
Sbjct: 418 KNELLLVYDYMENESLDKHLYNFHGQPTLNWSQRFKIIKDIASGLL-YLHEEW 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,289
Number of Sequences: 37544
Number of extensions: 352969
Number of successful extensions: 960
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -