Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p14
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 235 3e-62
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 95 6e-20
SB_37033| Best HMM Match : Annexin (HMM E-Value=0) 33 0.17
SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 28 8.4
>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 119
Score = 235 bits (575), Expect = 3e-62
Identities = 106/116 (91%), Positives = 114/116 (98%)
Frame = +2
Query: 101 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 280
MK++YKEEH FEKR+AEGEKIR+KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 281 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 448
YFLIRKRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 140
Score = 94.7 bits (225), Expect = 6e-20
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Frame = +2
Query: 113 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 289
+K+ SF R+ E IR K+P ++PVIVE+ K + L LDK K+LVP +LT+ QF +
Sbjct: 14 FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73
Query: 290 IRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 451
IR R+ L A + VNN + S TM LY+E DED FLY+ ++ + ++G+
Sbjct: 74 IRNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128
>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
Length = 287
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 697 LLFIFYYSSDDTQPKQRCENKAILYLL 617
L+ IF+Y+ D K C+NKA++YLL
Sbjct: 85 LILIFFYTLDIASNKPGCDNKALMYLL 111
>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 117 LYWNFMLIFYNTLQFQMIES*STSQSTAPCFLFLRY 10
+YW+ +L++Y TL ++ E+ S +++A C LR+
Sbjct: 98 VYWSILLVWYLTLMLKVQETGSPRETSAFCEAMLRF 133
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 442 DIFVGKC-YV*KEIFIMVFLVERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 284
D+ VG C Y + L +RP +++V ++++ VF+P +T DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185
>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 643
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -2
Query: 481 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLVERPHCCRCGWNDIVHEEEK 326
N L+ NN +L + +F G C+V K + IM FLV C R + + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 182 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 313
RV + + + + D K YL P D G+FY L +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 179 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 316
+RV + + + + D K YL P D G+FY L + H P
Sbjct: 81 ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126
>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 736
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +1
Query: 364 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 531
C N SLP P + + ++ +++C +Y L + F+ SD + L L
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442
Query: 532 LCIILWYFFIINWHIILYLS 591
LC+ W + H++ +S
Sbjct: 443 LCLNTWLSDQFDKHMVYIVS 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,305,988
Number of Sequences: 59808
Number of extensions: 383059
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -