Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p13
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    33   0.10 
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.18 
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.18 
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    29   1.6  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    29   2.2  
U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 147 LCWLWPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 326
           LC+LW  L  T T   TT  T+   P  TT      N +TT     T+P  + T+++PL+
Sbjct: 179 LCYLWVPL--TTTTTTTTTTTTTTSPMNTTTTTVLINGTTTT----TVPTNETTTTVPLN 232


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 317
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 159 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 317
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   LCCVSLQML-IYIFNIK*PEIALRESKIPFLINH 106
           L  + LQ+L +Y+   K P IA++ SKIP LINH
Sbjct: 38  LVALPLQILALYVIIYKTP-IAMKISKIPLLINH 70


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 72  YENRKYLF*LTIV*INRIFFRFSSSLCW--LWPTLKETATNLLTTARTSLILP 224
           Y  R ++F +       IF+RF SS+C+  +W  +    T+L+  + TS   P
Sbjct: 594 YGKRSWVFLVRSFSPLTIFYRFHSSVCFAEIWKNVYAAKTHLVHNSATSTATP 646


>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 123 IFFRFSSSLCWLWPTLKETATNL 191
           +FFRF +SLC ++P  K  AT +
Sbjct: 96  LFFRFCASLCGVFPYPKHAATQI 118


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 185 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 271
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 213 LILPKITTLMETATNLSTTVHITWTLPKAD 302
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 182 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 322
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 245  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 334
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 132 RFSSSLCWLWPT-LKETATNLLTTART-SLILPKITTLMETATNLSTTV 272
           RF S+     PT + ET T   TT R  S+  P +TT + T  + +TTV
Sbjct: 318 RFKSTTAATSPTFITETTTRQTTTTREKSISTPLLTTEVVTRPSPTTTV 366


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 174 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 290
           E  T ++TT  TS +  K+   M  AT       + WTL
Sbjct: 51  EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +2

Query: 164 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 331
           N Q     P +  P + N P  +     GY   P         PP+G  Y++P   P+  
Sbjct: 35  NPQPGASFPPNMNP-VTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93

Query: 332 ARGGK 346
            +GGK
Sbjct: 94  GKGGK 98


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +2

Query: 173 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 340
           G G  P    P  V PP  Y   P  +G    DNGA     P G PY    P P   G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,236
Number of Sequences: 27780
Number of extensions: 232118
Number of successful extensions: 606
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)