Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p12
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   3.6  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   6.3  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   6.3  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   6.3  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 667 TMTKMVLFVLYILYPIYLHKTLLFLMI*SN*IGEGPVFVFLFSFL 533
           T+TK++  VL  + P  + KT+LF+   ++   E P   F+ + L
Sbjct: 254 TITKLIQDVLAFVQPTLIQKTILFISSYTSPNPESPSRGFIIAIL 298


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 553 RRQDLHQFNYFISLRTV 603
           RR DLH FN +  LRTV
Sbjct: 242 RRTDLHPFNLYRHLRTV 258


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 DSCLHLKERHYXYLNTDLIILGQ 309
           D C H K     YL T L+ILG+
Sbjct: 256 DECYHQKRLSLIYLTTCLLILGK 278


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 318 ALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSG 422
           A+FGQND+ ++LG    H  +     P WI  + G
Sbjct: 69  AMFGQNDFSNLLGLKLDHTAR-----PLWINPIDG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,264
Number of Sequences: 5004
Number of extensions: 55880
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)