Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p12
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1318 + 32608441-32608833,32608953-32608997,32609092-326091...    29   2.8  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    29   2.8  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    29   5.0  
01_01_1217 + 9830435-9830770                                           28   8.7  

>04_04_1318 +
           32608441-32608833,32608953-32608997,32609092-32609130,
           32609382-32609552,32610042-32610194,32610362-32610397,
           32611123-32611184,32611590-32611680,32611767-32611808,
           32611904-32612012,32612161-32612275,32612354-32612403,
           32612577-32612655,32612763-32612813,32612966-32613107,
           32613315-32613359,32613634-32613741,32613843-32613884,
           32614388-32614570,32614932-32615135
          Length = 719

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 205 GDMATKRKSGVVDSCLHLKERHYXYLNTDLIILG 306
           G+   + + G +++CLHL  R +  L  D + LG
Sbjct: 386 GEFRQELRDGFIEACLHLVNRDFDGLAKDFVTLG 419


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 360 GNLHPVKTLYNIPSWIRGVSGHEYHI--LLRKKKMW--AKTGTPRLRPTKWKEIQKRLSF 527
           GNLH    +   PS+ +GVS H+  +  L RKK  +  AK  T + +  +  + + R S+
Sbjct: 527 GNLHEFSKVLKNPSYAQGVSEHQNSMKSLKRKKAQFSEAKISTRKTKNIRRTQTKSRFSW 586


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -3

Query: 568 EGPVFVF-LFSFLYRNDKRFCISF-HFVG--LNLGVPV---FAHIFFFL 443
           EGP +   L S +Y+N K FC+ + HF G   NLG  +   +A +  FL
Sbjct: 184 EGPFYAGELKSMVYQNSKTFCVYYGHFQGQYANLGTKISNSYARVVGFL 232


>01_01_1217 + 9830435-9830770
          Length = 111

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 466 FAHIFFFLSRI*YSCPLTPRIHDGILYNVLTGCRLP 359
           F  +FFF+  +      TP  H G++    T CR+P
Sbjct: 7   FIFLFFFIFLVFLPLLPTPPWHSGVVCRTTTPCRVP 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,284
Number of Sequences: 37544
Number of extensions: 308253
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)