Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3p07
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 153 2e-38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 82 7e-17
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 73 3e-14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 71 2e-13
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 64 1e-11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 58 1e-09
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 58 1e-09
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 58 1e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 54 3e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 53 5e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 52 8e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 52 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 50 4e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 48 1e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 2e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 6e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 7e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 45 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 2e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 41 2e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 40 5e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 8e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.004
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.008
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.018
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.024
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.024
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 33 0.032
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.055
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.073
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.073
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.13
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.22
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.39
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 28 1.2
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 2.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.8
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 8.4
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 153 bits (371), Expect = 2e-38
Identities = 69/172 (40%), Positives = 114/172 (66%)
Frame = +1
Query: 175 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 354
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 355 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 534
+ H +DG+I++PKRA+PREE ++ K+FV G+ D EE+ R +F+ FG ++
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 535 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDM 690
+++ DK+TG+ RGFGFV +++ V+ Q I + ++VK+A K +
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +1
Query: 154 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 333
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 334 VDEAQNNRPH-KIDGRIVEPKRAVPREEIK 420
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 82.2 bits (194), Expect = 7e-17
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Frame = +1
Query: 127 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 306
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 307 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEA-----------SATVKK 450
++ + A N +IDGR+V + PR +P A S
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ 630
+FV L + E+DL F G+I S+ + TD ++G+ +GFG+V F D D + C++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEM 426
Query: 631 N 633
N
Sbjct: 427 N 427
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +1
Query: 142 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 321
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 322 QAHMVDEAQNNRPHKIDGRIVEPKRAVPR 408
+ H I GR + PR
Sbjct: 416 DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 73.3 bits (172), Expect = 3e-14
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--- 348
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 349 NNRPHKIDGRIV--EPKRAVPREEIKRPEASATVKK--------LFVAGLKQDIEEEDLR 498
N++ +K V K+ EE+++ ++K LF+ L+ ++++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 499 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 642
FS FG I S ++TD E GK +GFGFV + + ++ + N ++
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Score = 64.1 bits (149), Expect = 2e-11
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 357
L++G LD T++ L E + G + + V +D T+RS G+ ++ + ++A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 358 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 534
+ I GR P R + + T +F+ L I+ + L + FS FG I+S
Sbjct: 142 NYTLIKGR---PCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 535 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHLDVKKAISKTD 687
V D E G +G+GFV FD + + N + D+ + V +S+ +
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 70.9 bits (166), Expect = 2e-13
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 1/163 (0%)
Frame = +1
Query: 154 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 333
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 334 VDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 510
V+ A Q K+ G+ + RA + + LFV L ++E L + FS
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVN----TLIGANLFVGNLDPLVDERVLYDTFS 120
Query: 511 TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 639
G +V V E G+ +G+GFV +D ++ D N+Q
Sbjct: 121 ALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 64.5 bits (150), Expect = 1e-11
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 354
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 355 RPHKIDGRIVEPKRAVPRE--EIKRPEASATVK--------KLFVAGLKQDIEE-EDLRE 501
+ K+ GRI+ A PR+ E+ + A K +L + L I++ + L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 502 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAIS 678
+FS FG + + + T K G+ GF FV D + N +I + + V A+S
Sbjct: 127 HFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185
Query: 679 K 681
K
Sbjct: 186 K 186
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 318
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 58.4 bits (135), Expect = 1e-09
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Frame = +1
Query: 127 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 303
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 304 GFITYSQAHMVDEAQNNRPHKIDGRIV--------EPKRAVPREEIKR-PEASATVKKLF 456
++ + V A ++ G V + ++A E+ R A +L
Sbjct: 284 AYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLC 343
Query: 457 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
V+ + ++ +ED++ F FG+I V + D + + +GFG++++
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 58.4 bits (135), Expect = 1e-09
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--N 351
L++G L+ T++ +++ + G+ V V ++++ T + G+ F+ ++ H A N
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 352 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFGNIV 528
N+P + + A ++ + A+ +FV L ++ E D+ F S + +
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 529 SVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKDQHLDVKKAISKT 684
S ++TD +T RG+GFV F D+ D + Q D+ + V A K+
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS 267
Score = 40.3 bits (90), Expect = 3e-04
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--------AH 330
+F+G L + + F ++ +M DP+T S+G+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 331 MVDEAQNNRPHKID-------GRIVEPKRAVPRE-------EIKRPE---ASATVKKLFV 459
M + +RP ++ + P VP +P A +FV
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 460 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
GL + + EE+L+ F FG IV V + K G GFV+F
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 351
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ- 627
LFV L ++EDL FS FG I+S V+ DKETG + F+EFD+ + V++ +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 628 QNHQIKDQ--HLDVKKAISK 681
QN I D H+D +++++
Sbjct: 306 QNVLIDDSRIHVDFSQSVAR 325
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 53.6 bits (123), Expect = 3e-08
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Frame = +1
Query: 166 HTRKLFIGGLDYRTTDSSLKEFYEQ-----WGEIVDVVVMKDPKTKR--SKGFGFITYSQ 324
HT K + R T +KE E+ E + + M K KR +KGF ++ ++
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT 174
Query: 325 AHMVDEAQNNRPHKIDGRIVEPKR--------AVPREEIKRPEASATVKK-----LFVAG 465
+ A ++GR + K + P + + + + KK LFV
Sbjct: 175 EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
Query: 466 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 603
L + + DL+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 235 LDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +1
Query: 448 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 627
+LFV L D+ +E L + FS + ++V VV D+E GK RGFGFV F D D + +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 628 QN 633
+N
Sbjct: 90 KN 91
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 52.0 bits (119), Expect = 8e-08
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 597
+++ L D+ E+D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +1
Query: 127 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 300
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 301 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 384
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 354
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 355 RPHKIDGRIVEPKRA 399
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 406 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGF 582
+E PE S + LFV+G+ ++E++L++ FS FG + V ++ + T RGFGF
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
Query: 583 VEFDDYDPVDRVCLQQNHQ-IKDQHLDVKKA 672
+ F + N Q + L+V+KA
Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 603
L V L D EE+LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 136 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 309
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 310 ITY 318
++Y
Sbjct: 248 VSY 250
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +1
Query: 409 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 588
E+ + + + K+LF+ L E+DL+ F FG + V + DK+T +GF +++
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
Query: 589 FDDYDPVDRVCLQ 627
F D D R L+
Sbjct: 371 FHDADDAVRAYLE 383
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD---KETGK--KRGFGFVEFDDYDPVDR 615
++V L ++E+ ++ F +S + K GK GFGFVEF D
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 616 VCLQQNHQIKDQH-LDVK 666
N + D H L++K
Sbjct: 681 AMHAMNGFVLDGHKLEIK 698
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +1
Query: 409 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 588
+ + P T + +FV L + EEE L YF G+I V +V D +T +GF +++
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 589 FDDYDPVDRVCL 624
F D VD+ L
Sbjct: 318 FKDTMGVDKALL 329
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 336
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 337 DEAQNNRPHKI-DGRIVEPKRA 399
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/85 (23%), Positives = 45/85 (52%)
Frame = +1
Query: 409 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 588
E ++ + S + ++V + + E+L+ +F++ G++ V+++ DK TG +GF ++E
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIE 102
Query: 589 FDDYDPVDRVCLQQNHQIKDQHLDV 663
F + V L + ++ L V
Sbjct: 103 FSEPSLVPNALLLNGSMLHERPLKV 127
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 154 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 333
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 334 VDEA 345
V A
Sbjct: 109 VPNA 112
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 46.0 bits (104), Expect = 6e-06
Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Frame = +1
Query: 172 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 351
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 352 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 531
++ R++ + PRE +++ S+ + + E + +F I S
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSF-ETTESNKMSTPKKSFEQIKS 873
Query: 532 VSV-VTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 639
S+ VT+ + F+ Y + RV L H+
Sbjct: 874 KSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHE 910
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
LFV L +D E L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 318
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 597
+FV + D+ E+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 318
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 184 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 363
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 364 KIDGRIVEPKRAVPREEIKRPEAS 435
+ GR V A PR R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 457 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 603
V L D+ E DL ++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 603
L+V L E+ +R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 348
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 349 NNRPHKIDGRIVEPKRAVPREEI 417
+N + + G++++ K +P +++
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +1
Query: 427 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 597
E+++ + +++ GL + +E+L Y + FG + S + D ET +G+GF F++
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Score = 38.7 bits (86), Expect = 8e-04
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 3/181 (1%)
Frame = +1
Query: 124 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 303
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 304 GFITYSQ---AHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQ 474
GF + + A + A ++ + + + ++ E++ L+++ L
Sbjct: 340 GFACFEEEKSALICISAMTLCGYQCS--FAKESFSARLQSLQDTEST----NLYISNLPL 393
Query: 475 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 654
E D+ F I+S V+ D + + RG GF D + + + N+ + D
Sbjct: 394 HWNESDISTLFKP-SKIISNRVLRDSKE-QSRGVGFARMQDRKTAEDIINKFNNFVLDPA 451
Query: 655 L 657
L
Sbjct: 452 L 452
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 39.5 bits (88), Expect = 5e-04
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Frame = +1
Query: 175 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 354
+LF+G + + T + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 355 RPHK--IDGRI-VEPKRAVPREE--------IKRPEASATVKKLFVAGLKQDIEEEDLRE 501
K + RI VEP R R K P T +L V L +D+ +DL++
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 502 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHLDVKK 669
G TD + G G VEF + + N + IK Q + +++
Sbjct: 117 VMRKAGE----PTFTDAHR-ENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRE 168
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 597
++V + ++ EE + + F G + S +V D E+G+ +G+GF E+ D
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 354
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.3 bits (85), Expect = 0.001
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Frame = +1
Query: 139 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 318
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 319 SQAHMVDEA-QNNRPHKIDGRIV---EPKRAVPR--EEIKRPEASATVK------KLFVA 462
S A A + K GR+V E + R P AS+ K +LFV
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVG 173
Query: 463 G---------------LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 585
L ++ +DL++ F G+++ + ++E G+ RG G V
Sbjct: 174 NVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIV 228
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 318
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.096
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +1
Query: 193 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 372
L Y LK+ + Q G ++ + + + RS+G G + S A H D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEG-RSRGIGIVVMSSMKEAMHAIQML-HNTD 247
Query: 373 --GRIVEPKR-AVPREEIKR------PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 525
GR +E + +I+ P + ++V L + +L + F+ G++
Sbjct: 248 FMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCS-DCIYVGNLPWATSDRNLLDLFTDIGSV 306
Query: 526 VSVSVVTDKETGKKRGFGFVEFDD 597
+ + + TG+ +GFG V+F++
Sbjct: 307 IRARIAYEP-TGRSKGFGVVQFEN 329
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +1
Query: 178 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 351
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 352 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 456
++G + KR KR + + +F
Sbjct: 481 T----LNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 34.7 bits (76), Expect = 0.014
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 424 PEASATVK--KLFVAGLKQDI--EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
P ++ T+ LFV L +I + L E FS FG I S ++ + T +G+GFV F
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.008
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Frame = +1
Query: 157 EPEHTRKLFIGGLDYRTTDSSL-KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---- 321
+PE + +F+G L T DS L F + ++ DP T S+ +GF+ +S
Sbjct: 179 DPEFS--IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKE 236
Query: 322 QAHMVDEAQN----NRPHKIDGRIVEPKRAVPREEIKRPEASATVKK------------- 450
Q H + Q RP +I + + ++ + ++T +
Sbjct: 237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
Query: 451 --LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 615
+FV GL ++ E+DL+ F FG I+++ + K G GFV++ + ++
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEK 347
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 351
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 448 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
K++++ L ++ E+ + E FG+++S ++ + G +GF F EF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 354
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 355 RPHKIDGRIV 384
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.9 bits (74), Expect = 0.024
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 457 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 636
V L + E L F FG I+SV++ KE R + FVEFD+ + N+
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNY 68
Query: 637 QI 642
I
Sbjct: 69 SI 70
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 33.5 bits (73), Expect = 0.032
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 703 YPRQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFSFQFLYLS 542
Y R F L F+H +L FG++ +++ LD H N PF+FQ+ YLS
Sbjct: 176 YGRSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQY-YLS 227
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.055
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +1
Query: 178 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 345
LF+ L+ ++ L K++++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 346 QNNRPHKI-DGRIVEPKRAVPREEIK 420
+ + I DGR + +RA I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +1
Query: 124 MKPSESGDDYEEPEHTRKLFIGGLD-YRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 300
M PS P +F+G LD T L + + ++G+++D ++ K
Sbjct: 349 MNPSMMFAAMPPPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAF 408
Query: 301 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 414
F + A+ + PH+ VE ++ P ++
Sbjct: 409 LRFDSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQ 446
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.073
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 160 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 333
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 334 VDEAQNNRPHKIDGRIVEPKR 396
A++ ++G +V KR
Sbjct: 438 AVRAKDT----LNGMMVGKKR 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 424 PEASATVKKLFVAGLKQDIE--EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
P + L+V L + + L + FS FG+I+S + +G +G+GFV F
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.073
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 KKLFVAGLKQDIEEEDLR-EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 591
+++ + GL +I EE + ++T + +V+++ +KET K R F F +F
Sbjct: 71 QEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 448 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 594
++FV+ + + E LR +F +FG + + + + TG G + FD
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 427 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 552
+ S + +F+ L I E+++RE FG I + +VT++
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 169 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 252
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 553 ETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAISKTD 687
E + RGFGFV F + + R + N Q+ D L VK A+ + D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
Score = 29.1 bits (62), Expect = 0.68
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Frame = +1
Query: 139 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VDVVVMKDP-----------K 282
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 283 TKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI-VEPKRAVPREEIKRPE 429
+R +GFGF++++ A A K G + + K AV RE+ + E
Sbjct: 254 QRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDE 303
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 418 KRPEASATVKKLFVAGLKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFD 594
K ++ + L++ +++ I L+ FG+ V V ++T + RG FV FD
Sbjct: 17 KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76
Query: 595 DYDPVDRVCLQ-QNHQIKDQHLDVKKAISKTDM 690
+ + R Q + + + + ++ + SK+D+
Sbjct: 77 NLENASRALKDLQGYPLYGKPMMIQYSKSKSDI 109
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ- 627
LF+ L I E++ + F +G + + + +T RG FV +++ R C +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQT---RGTAFVVYENVQDARRACEKL 70
Query: 628 QNHQIKDQHLDV 663
+ D++L V
Sbjct: 71 SGYNFMDRYLVV 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 172 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 351
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 352 NRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 450
+++ GR +E V R E K+P S K
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 166 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 267
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 319 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 471
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 130 PSESGDDYEEPEHTRKLFI 186
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 453 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 307
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 451 LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 540
++V L ++I ++LR YF FG I+ V
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 723 TATSSIITPARHVSFRYCFFHIQMLIFNLVILLQ 622
TA +++ ++H SF Y F +I+ L+ + I +
Sbjct: 115 TALITVLGWSQHTSFFYAFLNIRTLVCGITIFTE 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,334
Number of Sequences: 5004
Number of extensions: 57053
Number of successful extensions: 265
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -