Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p06
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0601 - 4907397-4907685,4908592-4909100                           30   2.5  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    29   4.4  
03_02_0545 + 9373344-9374963                                           29   4.4  
01_04_0056 + 15476868-15476896,15477581-15478259                       29   4.4  
12_01_0747 - 6724513-6724801,6725708-6726174                           29   5.8  
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    29   5.8  

>12_01_0601 - 4907397-4907685,4908592-4909100
          Length = 265

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 14  VGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPVAD--GIAGFLGD 166
           +G   +R    DV SE+  S+ VKSS  +   VI GY +   D  G+   L D
Sbjct: 192 IGIEEMRGKAKDVSSEEGNSEEVKSSDDDEDMVIGGYTQDPYDDSGLEDLLQD 244


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 629  CISDILNTFSAKYVGLPELENSIVKLFIEACDSLTV 736
            C+ ++  T  +  V +P+L  S+ +LFI++C +L V
Sbjct: 1874 CLEELNITSCSGIVEIPKLPASLEELFIQSCQNLVV 1909


>03_02_0545 + 9373344-9374963
          Length = 539

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 391 GPARLGHPGLSFSAPPGYLRPTTRDSHHYVHRSFPRNL 504
           G +RLG P   FSA  G++R       HY   S P+ L
Sbjct: 218 GHSRLGEPQFPFSAEKGFVRSHRMQRKHYRGLSNPQCL 255


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 165 SPRNPAMPSATGLTYPSITFPPSPT 91
           +PR+PA P+AT  T P    PP PT
Sbjct: 74  NPRHPATPTATAAT-PKPNTPPDPT 97


>12_01_0747 - 6724513-6724801,6725708-6726174
          Length = 251

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 14  VGTNNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVK-PVAD-GIAGFLGD 166
           +G   +R    DV SE+  S+ VKSS  +   VI GY + P  D G+   L D
Sbjct: 178 IGIEEMRGKAKDVSSEEGNSEEVKSSDYDEDMVIRGYAQNPYDDSGLEDLLQD 230


>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 501 VAWKRAMDVMVTVACGRSKVSRWCRER 421
           ++W++  D++V VA G   +  WC  R
Sbjct: 444 ISWEKLYDILVGVAQGLDYLHHWCNHR 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,831,877
Number of Sequences: 37544
Number of extensions: 418825
Number of successful extensions: 1128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)