Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3p02
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 215 ELHINSAPKPNTKYKPVN 162
           ++H    PKP TK KP +
Sbjct: 244 KVHATKPPKPQTKTKPTS 261


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 442 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 326
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 442 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 326
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 501 QHRETRLKCRFNAIKKIIMLPVWWQIPSERPIKPARFLHMF*IKFK*YKFQHFAYAPI*N 680
           +H  TR   + N +K ++     W++      K  + +  + IK+K +  ++  + PI N
Sbjct: 222 KHINTRHNTK-NGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISN 280

Query: 681 LI 686
           LI
Sbjct: 281 LI 282


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 442 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 326
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 356 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFC 267
           PT+ S+K S I+     T+Y+        C
Sbjct: 281 PTLPSDKLSKIQTLKLATRYIDFLFQVLHC 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,413
Number of Sequences: 438
Number of extensions: 5664
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)