Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o23
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   3.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   8.8  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 257 HLAKCCCMPGRSHGFLHFFLRSTI-LLWNEF 168
           +L  CCC+      F+  FLRST  +L N+F
Sbjct: 492 NLNVCCCIAEPIQSFILSFLRSTYKVLKNDF 522


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +2

Query: 17  LHHI---LNKKTN*IISDFFSSRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAE 187
           +HHI   + K  + ++  F    L      +V   M+ S        +   W+EIH +A+
Sbjct: 563 IHHIKLKIRKSRHRLLLAFLKPSLMTYVRSTVARSMELSIRHAFEQVDR-EWYEIHKEAK 621

Query: 188 WYFAKKSAK 214
               K S+K
Sbjct: 622 SEIEKDSSK 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,502
Number of Sequences: 5004
Number of extensions: 26488
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)