Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o23
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    28   2.9  
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    27   8.7  

>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
            21947644-21947720,21948289-21948477,21949188-21949448,
            21949527-21949632,21951330-21951517,21951814-21951971,
            21952015-21952840,21952947-21953210
          Length = 1487

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 141  IVLRKHHGGKFIPKQNGTSQKKVQKTVTSSRHTTAL 248
            +V++K H  +F    NGT+  K+ +T+ + +  T L
Sbjct: 1108 LVIKKKHSDEFTRNNNGTNVPKIPETLETIQEETEL 1143


>08_01_0540 +
           4691929-4692014,4692915-4693125,4693756-4693885,
           4695422-4696072,4696179-4696395,4697040-4697111,
           4697167-4697257,4697367-4698363,4698914-4699044,
           4699584-4699802,4700110-4700805,4700912-4701121,
           4701606-4701710
          Length = 1271

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 117 TSAIPRT*IVLRKHHGGKFIPKQNGTSQKKVQKTVTSSRHTTAL 248
           T A  RT IV++KH+G  F  ++N   ++ +  + ++ R T A+
Sbjct: 255 TPASNRTDIVVKKHNG--FASEENDNGKRILPSSFSNGRTTNAM 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,915,065
Number of Sequences: 37544
Number of extensions: 140353
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)