Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o22
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007451-1|AAH07451.1|  374|Homo sapiens XPA binding protein 1, ...    33   0.88 
AJ010842-1|CAA09376.1|  358|Homo sapiens ATP(GTP)-binding protei...    33   0.88 
AC074091-4|AAX93201.1|  374|Homo sapiens unknown protein.              33   0.88 
AB044661-1|BAB17612.1|  374|Homo sapiens XPA binding protein 1 p...    33   0.88 

>BC007451-1|AAH07451.1|  374|Homo sapiens XPA binding protein 1,
           GTPase protein.
          Length = 374

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 54  NVAVNDTSNYLSITNLTWVKPRGGVVNSFRLIHGRTPRNCLKFVFKRQDLSSVYLL 221
           N+ + DT  Y  +     + P GG+V S  L   R  +  +KF+ K Q++S   L+
Sbjct: 67  NIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQ-VMKFIEKAQNMSKYVLI 121


>AJ010842-1|CAA09376.1|  358|Homo sapiens ATP(GTP)-binding protein
           protein.
          Length = 358

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 54  NVAVNDTSNYLSITNLTWVKPRGGVVNSFRLIHGRTPRNCLKFVFKRQDLSSVYLL 221
           N+ + DT  Y  +     + P GG+V S  L   R  +  +KF+ K Q++S   L+
Sbjct: 51  NIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQ-VMKFIEKAQNMSKYVLI 105


>AC074091-4|AAX93201.1|  374|Homo sapiens unknown protein.
          Length = 374

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 54  NVAVNDTSNYLSITNLTWVKPRGGVVNSFRLIHGRTPRNCLKFVFKRQDLSSVYLL 221
           N+ + DT  Y  +     + P GG+V S  L   R  +  +KF+ K Q++S   L+
Sbjct: 67  NIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQ-VMKFIEKAQNMSKYVLI 121


>AB044661-1|BAB17612.1|  374|Homo sapiens XPA binding protein 1
           protein.
          Length = 374

 Score = 33.5 bits (73), Expect = 0.88
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 54  NVAVNDTSNYLSITNLTWVKPRGGVVNSFRLIHGRTPRNCLKFVFKRQDLSSVYLL 221
           N+ + DT  Y  +     + P GG+V S  L   R  +  +KF+ K Q++S   L+
Sbjct: 67  NIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQ-VMKFIEKAQNMSKYVLI 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,990,997
Number of Sequences: 237096
Number of extensions: 1920196
Number of successful extensions: 6141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6141
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)