Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o16
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   135   7e-33
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.24 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.72 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.9  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  135 bits (326), Expect = 7e-33
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 1/204 (0%)
 Frame = +3

Query: 129 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 308
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 309 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 485
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 486 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 665
             L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+  
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202

Query: 666 SDLPLYTKKSIESASKLTAYDSLD 737
               LYT K+I  +  L+AY+  D
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD 226


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 327 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 491
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 492 LQRLYGKHIISVA 530
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 570  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 749
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 750  QSY 758
            QS+
Sbjct: 2516 QSF 2518


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 446 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 312
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 446 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 312
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 502 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 630
           C   ++L  L +S++   LS  +  +PL  + RDT L+   +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 AMTSDRGLCGAVHTGVSKVIRNRLSE 437
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 587 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 435
           SS ++  V  + W +  L  +TND  +++S+ DT R  S     DV+   F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +1

Query: 418 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 597
           S+  S++ +  +S  S    +   S    + +TS  L   S  S  L+ + ++   L+S 
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142

Query: 598 RDTSLVPERSFTTSSSLWSRTPSPT 672
             TS     S TTSSSL S + + T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 578 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 405
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 183  KSVKNIQKITQSMKMVSAAKYTRAERDLK 269
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,636
Number of Sequences: 5004
Number of extensions: 74192
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)