Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o14
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   245   5e-66
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   221   1e-58
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.5  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   7.9  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  245 bits (599), Expect = 5e-66
 Identities = 111/170 (65%), Positives = 143/170 (84%)
 Frame = +3

Query: 189 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 368
           S++Y+V GG RAV+FDR +GV++ VV EGTHF IPW+Q+ I++D+R+RPRN+ T TGSKD
Sbjct: 24  SSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKD 83

Query: 369 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 548
           LQ V++TLR+L RP    LP+IY  LG+DYDERVLPSI +E+LK+VVAQFDA ELITQRE
Sbjct: 84  LQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQRE 143

Query: 549 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAE 698
           +VS K+   L +RA +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQEAE
Sbjct: 144 VVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAE 193


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  221 bits (539), Expect = 1e-58
 Identities = 99/170 (58%), Positives = 135/170 (79%)
 Frame = +3

Query: 189 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 368
           ++L+NVDGGHRA+ + R  G+K L+  EGTHF IPW++  I +D+R++PRN+ ++TG+KD
Sbjct: 34  TSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKD 93

Query: 369 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 548
           LQ VNI  R+L RP    LP+IY  LG DYDERVLPSI +EVLK+VVAQF+A +LITQRE
Sbjct: 94  LQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRE 153

Query: 549 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAE 698
            VS+ V ++L +RAA+F ++LDD+S+TH+ F  EFT AVE KQ+AQQ+A+
Sbjct: 154 RVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQ 203


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +3

Query: 276 THFFIPWVQRPIIFDIRSRPRNVP---TITGSKDLQNV----NITLRILFRPVPDQLPRI 434
           TH+ +P +  P+ +DIR  P       T+T   + + +     + L IL   VP  LP I
Sbjct: 519 THYVLPTLLAPLGYDIREHPGGQQFWNTLTAKSEAKTIRSFTKLKLFILLIAVPFALPMI 578

Query: 435 YTI 443
             I
Sbjct: 579 ILI 581


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 293 RNEEMCAFTNN*LLNTSKSIEDNSSVTTVDIIQCRIDNTSNQCH 162
           +NEE C      LL  S +  DNSS  ++ +  C+     +Q H
Sbjct: 229 KNEEKCTVL---LLKRSNTDVDNSSSLSLTLPLCKFTKNGHQVH 269


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +3

Query: 432 IYTILGIDYDERVLPSITSEVLKAVVAQ----FD---AGELITQREIVSQKVNDSLTER 587
           IYT+  I   ER+   I  + L A+++Q    FD   AGE+ T+    +  + D L E+
Sbjct: 159 IYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEK 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,871
Number of Sequences: 5004
Number of extensions: 50907
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)