Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o13
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.73 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   6.8  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 401 WGHHPNSENNCRRSN*KGKRLSIPGWS 481
           W  H N+ N+ +R     K L +PGW+
Sbjct: 306 WNEHGNASNDDKRDVYDAKTLQLPGWA 332


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 91  FLLPLNNKIIFGDIFPKINRNRPLFDLFIC 2
           F+ P ++   +  I P +N + P F  FIC
Sbjct: 206 FVAPCSHSYHYKCIRPTLNESHPYFSCFIC 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,348
Number of Sequences: 5004
Number of extensions: 51296
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)