Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3o11
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 83 2e-16
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 79 3e-15
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.38
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 32 0.38
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 32 0.38
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 32 0.50
AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B prote... 32 0.50
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 31 1.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 31 1.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 31 1.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 31 1.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 31 1.1
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical pr... 29 3.5
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 29 3.5
AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical... 29 3.5
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 3.5
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 29 3.5
Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical p... 29 4.6
Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z27080-3|CAA81604.3| 379|Caenorhabditis elegans Hypothetical pr... 29 4.6
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 28 6.1
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 28 6.1
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical ... 28 6.1
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 28 6.1
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.1
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.1
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 83.0 bits (196), Expect = 2e-16
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 4/184 (2%)
Frame = +2
Query: 191 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGL 370
ARP+ P K RL +P+ WF F TGV+GPY F GL +L +KE++V E + + +
Sbjct: 99 ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156
Query: 371 SLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQG- 547
++ + G K+ L + N + +G Q + L++A+E +KT + +
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKTSAKQTESL 213
Query: 548 ---QELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWI 718
+E A KE++ LQLEA YR+ + +E+KRR+DY E + R+ ++ ++ I
Sbjct: 214 NSIKESYPTALKESMALQLEATYRKNVQSVATELKRRIDYLKETEESKARVEREQLLKLI 273
Query: 719 VSNV 730
S V
Sbjct: 274 NSEV 277
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 79.4 bits (187), Expect = 3e-15
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Frame = +2
Query: 212 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 391
P K RL +P+ WF F TG +GPY F GL +L +KE++V E + + + ++
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161
Query: 392 VAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWR----AQGQELL 559
+ G K+ A L K+ + + +G Q + L++A++ KT + A +E +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQERVG-FFKGLIQ--EDLKEAVDFRKTSAAQTASFAALKEGM 218
Query: 560 IQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNV 730
+ K+++ LQLEAAYR+ + +E+KRR++Y E + R + ++ I +V
Sbjct: 219 PTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLINDSV 275
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 550 GAPH-PGQEGER-APAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDS 720
GAP PG +G+ AP A G+ G + ASG P + GAP +P A + +S
Sbjct: 159 GAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASGAPGNPGQAGAPGQPGADAQSES 217
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +1
Query: 520 EDGAVARAGTGAP----HPGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPAREVERGA 684
E+G GAP PGQ G+R PA G + +G + G P R+ + G
Sbjct: 198 ENGNNGEPQPGAPGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDGQPGH 257
Query: 685 PSRPEAHGR 711
P +P GR
Sbjct: 258 PGQPGKDGR 266
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 32.3 bits (70), Expect = 0.38
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +1
Query: 499 GGRNRGREDGAVARAGTGAPH--PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREV 672
G R EDGA G P PGQ G+ P RG GE L G+A G
Sbjct: 161 GNPGRNGEDGAPGPQGPSGPPGPPGQPGQ--PGQRGP-PGEPGALLPGGDAPPGPSGPPG 217
Query: 673 ERGAPSRPEAHG 708
GAP +P G
Sbjct: 218 RPGAPGQPGKAG 229
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 464 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 306
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B protein
protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 464 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 306
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 520 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSR 693
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1026 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1085
Query: 694 PEAHGR 711
P GR
Sbjct: 1086 PGKAGR 1091
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGR 711
PG +G AP +G G VR G++ +GLP +RGAP GR
Sbjct: 469 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGR 515
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGAPSRP 696
PG++GE PAAR +G+A + LRG + SGLP +G P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 520 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSR 693
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1025 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1084
Query: 694 PEAHGR 711
P GR
Sbjct: 1085 PGKAGR 1090
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGR 711
PG +G AP +G G VR G++ +GLP +RGAP GR
Sbjct: 468 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGR 514
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGAPSRP 696
PG++GE PAAR +G+A + LRG + SGLP +G P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 520 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSR 693
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1025 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1084
Query: 694 PEAHGR 711
P GR
Sbjct: 1085 PGKAGR 1090
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGR 711
PG +G AP +G G VR G++ +GLP +RGAP GR
Sbjct: 468 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGR 514
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGAPSRP 696
PG++GE PAAR +G+A + LRG + SGLP +G P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 520 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSR 693
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1026 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1085
Query: 694 PEAHGR 711
P GR
Sbjct: 1086 PGKAGR 1091
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGR 711
PG +G AP +G G VR G++ +GLP +RGAP GR
Sbjct: 469 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGR 515
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGAPSRP 696
PG++GE PAAR +G+A + LRG + SGLP +G P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 520 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSR 693
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1062 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1121
Query: 694 PEAHGR 711
P GR
Sbjct: 1122 PGKAGR 1127
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGR 711
PG +G AP +G G VR G++ +GLP +RGAP GR
Sbjct: 505 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGR 551
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 562 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGAPSRP 696
PG++GE PAAR +G+A + LRG + SGLP +G P
Sbjct: 1057 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1105
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/70 (32%), Positives = 29/70 (41%)
Frame = +1
Query: 502 GRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERG 681
GRN + G+ G PGQ G R PA + G +G A+G P + G
Sbjct: 198 GRNGEPQPGSPGEPG----RPGQPGSRGPAGQPGKDGAQGGPGEKG--ANGEPGQPGRDG 251
Query: 682 APSRPEAHGR 711
P RP GR
Sbjct: 252 QPGRPGQPGR 261
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 428 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQ----WRAQGQELLIQAKKENVLLQL 595
W DK E +W + +T E I+ E E W+ +++L + K+EN LL+L
Sbjct: 447 WSDKRNEENAIKWKQ---ETDNIPEVVIKNEDDETDVLYWKLSDEDVLERCKEENELLKL 503
Query: 596 EAAYRERL 619
+ +L
Sbjct: 504 DLLTEHQL 511
>Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical
protein K08C7.4 protein.
Length = 194
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 481 PNRESTGGRNRGREDG--AVARAGTGAPHPGQEGERAPAARGRLQGEA 618
P R + G R+ +E G +V + A ++ ERAP+ARGR Q A
Sbjct: 87 PRRSTRGKRSYDQETGGRSVRKVVKKAKEVNKKPERAPSARGRGQKPA 134
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 547 TGAP-HPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHG 708
TG P PGQ+G P LQG+ +GE G+P + G P RP G
Sbjct: 202 TGPPGFPGQKGPNGPRGSPGLQGQDG---KKGE--QGMPGPQGPTGRPGRPGPKG 251
>AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical
protein Y111B2A.5a protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 440 EVEATENEWNEGRNQT-VKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE---AAY 607
E + TE+E R++ VK LED I GE+ E+ A+ + N + L+ A
Sbjct: 189 EEKLTESELKTQRSEEKVKNLEDFIVGERMEEAEAEAEAAADGGGARNEVSHLKRYIADL 248
Query: 608 RERLMYAYSEVKRRLDYQLEKSNVERRLAQ 697
+ +L E+K + +L+++N ++ Q
Sbjct: 249 QSKLSTMEEELKVLREQKLDENNEATQVRQ 278
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = +1
Query: 481 PNRESTGGRNRGRED-GAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 657
P R + G G E GA A AP E APAA G G +AA+
Sbjct: 275 PPRSAALGAGGGAEPAGAAPEAAAAAPEAAPEA--APAAEGAGGGAEPAGAAAPDAAAAA 332
Query: 658 PAREVERGAPSRPEAHG 708
P AP+ A G
Sbjct: 333 PEAAPAEAAPAAEGAGG 349
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Frame = +1
Query: 499 GGRNRGREDGAVARAGTGAP--HPGQEGERAPAARGRLQGEA--HVRLLRGEAASGLPAR 666
G R E G G+ P + G G P GE H + + GEA G P R
Sbjct: 198 GSRGYPGESGEPGTPGSAGPKGNAGPAGPPGPPGYPGRPGETGDHGKTIAGEAPPGPPGR 257
Query: 667 EVERGAPSRPEAHG 708
+ E G P G
Sbjct: 258 QGEMGPQGPPGPPG 271
>Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 331 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 185
LAA+ C T +V+ V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 331 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 185
LAA+ C T +V+ V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z27080-3|CAA81604.3| 379|Caenorhabditis elegans Hypothetical
protein F55H2.7 protein.
Length = 379
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 437 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLI---QAKKENVLLQLEAAY 607
K+ E T+ N+ R Q + + I + RA+ QE + Q K ++ +E +
Sbjct: 269 KDHERTDEHRNKARTQGITQTMERIV--LNARLRAERQEAALKRNQRKSRESVMFVEKSK 326
Query: 608 RERLMYAYSEVKRRLDYQLEKSNVERRLAQK 700
R + Y Y E + + ++ + K+N + +K
Sbjct: 327 RANVEYEYGENEIKANWLMLKANTVEKTTEK 357
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +2
Query: 425 AWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAA 604
A + ++ E + NE Q KAL++ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 605 YRERLMYAYSEVKRRLDYQLEKSNVERRLA 694
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +2
Query: 425 AWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAA 604
A + ++ E + NE Q KAL++ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 605 YRERLMYAYSEVKRRLDYQLEKSNVERRLA 694
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 437 KEVEATENEWNEGRNQTVKALEDA-IEGEKT----EQWRAQGQELLIQAKK 574
KE+EA +W + + K L + +E +T E+W+ + QE+ IQ K+
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQ 300
>AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical
protein Y51B9A.8 protein.
Length = 168
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 301 CGSGNIPVQQGNLCNGARILLRTVTAGHGVCG 396
C +GN V G+ C A+++ T+T G+ G
Sbjct: 36 CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +1
Query: 499 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 678
G R + + G +A G A PG +G P QGE V G A G P R+ E
Sbjct: 195 GPRGQAGQPGTIAIVGL-AGRPGPQG---PLGEPGAQGEPGVDGKDG--ALGAPGRKAEN 248
Query: 679 GAPSR 693
G P +
Sbjct: 249 GRPGK 253
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +1
Query: 427 LVGQGXXXXXXXXXXXXXPNRESTGGR-NRGREDGAVARAGTGAPHPGQEGERAPAARG 600
L+G G P GG G + G G G P PGQ G P G
Sbjct: 157 LMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPG 215
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +1
Query: 427 LVGQGXXXXXXXXXXXXXPNRESTGGR-NRGREDGAVARAGTGAPHPGQEGERAPAARG 600
L+G G P GG G + G G G P PGQ G P G
Sbjct: 437 LMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPG 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,757,347
Number of Sequences: 27780
Number of extensions: 358808
Number of successful extensions: 1368
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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