Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o09
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...   181   4e-46
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    89   2e-18
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    77   1e-14
U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical p...    58   8e-09
U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical p...    58   8e-09
U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical p...    43   2e-04
Z82054-2|CAN86644.1|  316|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    29   4.1  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   4.1  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z78545-1|CAB01765.1|  150|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   9.4  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score =  181 bits (441), Expect = 4e-46
 Identities = 80/169 (47%), Positives = 117/169 (69%)
 Frame = +3

Query: 174 QQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 353
           Q+V+ ++ + +P      YK  +L+T+G  Q+L+D++GK+YLD FGGIVTVSVGHCHPK+
Sbjct: 2   QRVQALRPL-LPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKI 60

Query: 354 NAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKA 533
           NAAL +Q   LWHTT++Y    IYEY E+L +K P  LN V+ VNSGSEAN+LA  LA+ 
Sbjct: 61  NAALTEQAQKLWHTTSIYHTEPIYEYAEKLLSKFPSKLNSVFFVNSGSEANDLALALARN 120

Query: 534 YTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYHAVHPDPF 680
           YTG  D+IS++  YHG T +++G T   +++   P     + +++ DP+
Sbjct: 121 YTGRFDVISMRNGYHGMTQTVLGATNLGNWKPVFPHGFNIFKSLNADPY 169


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
 Frame = +3

Query: 237 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRH 413
           P ++++  MQ+LYD    ++LD    +    VGHCHPKV  A+  QL     T N+ +  
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQLAT--STCNVRFVS 105

Query: 414 PKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAYTGNLDIISLQTSYHGYTSS 593
            ++ +  EQ+ + LPG L+ V   NSGSEAN+LA  LA+ YT + D I ++ +YHG+ ++
Sbjct: 106 TQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLARDYTKHKDAIVIEHAYHGHVTT 164

Query: 594 LMGLTATQ-SYRMAIPVPPGFYHAVHPDPF 680
            M L+  +  +   +  P   + A  PD F
Sbjct: 165 TMELSPYKFDHGSTVSQPDWVHVAPCPDVF 194


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
 Frame = +3

Query: 237 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRH 413
           P ++++  MQ+LYD    ++LD    +    VGHCHPKV  A+  QL     T N+ +  
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQLAT--STCNVRFVS 105

Query: 414 PKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAYTGNLDIISLQTSYH 578
            ++ +  EQ+ + LPG L+ V   NSGSEAN+LA  LA+ YT + D I ++   H
Sbjct: 106 TQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLARDYTKHKDAIVIEQLVH 159


>U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical
           protein C16A3.10c protein.
          Length = 226

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 33/100 (33%), Positives = 55/100 (55%)
 Frame = +3

Query: 237 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHP 416
           PV L++G   +++D +GK+Y D       V+ GHCHPK+   +++Q   L  T+  + + 
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTSRAFYNN 99

Query: 417 KIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAY 536
            + EY E+   KL    + V  +N+G EA E A  LA+ +
Sbjct: 100 VLGEY-EEYVTKL-FKYDKVLPMNTGVEACESAVKLARRW 137


>U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical
           protein C16A3.10a protein.
          Length = 422

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 33/100 (33%), Positives = 55/100 (55%)
 Frame = +3

Query: 237 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHP 416
           PV L++G   +++D +GK+Y D       V+ GHCHPK+   +++Q   L  T+  + + 
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTSRAFYNN 99

Query: 417 KIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAY 536
            + EY E+   KL    + V  +N+G EA E A  LA+ +
Sbjct: 100 VLGEY-EEYVTKL-FKYDKVLPMNTGVEACESAVKLARRW 137


>U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical
           protein C16A3.10b protein.
          Length = 357

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +3

Query: 237 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTN 401
           PV L++G   +++D +GK+Y D       V+ GHCHPK+   LKD   V+    N
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKL---LKDNEAVVVFAEN 91


>Z82054-2|CAN86644.1|  316|Caenorhabditis elegans Hypothetical
           protein T26F2.3 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
 Frame = +3

Query: 258 HMQWLYDNDGKRYLDLF-GGIVTVSVGH-----C---HPKVNAALKDQLDVLWHTTNLYR 410
           H +WL+ N  K Y   F G + T+ +G      C     K+  +   ++DV W   N   
Sbjct: 205 HGKWLHWNSQKHYFQSFLGNVPTILIGRKDQNDCVYQVDKIKTSEIPKMDVKWKVQNCL- 263

Query: 411 HPKIYEYVEQLAAKLPGD 464
             +++  + ++ +KLP D
Sbjct: 264 -AQLFTVLNKIMSKLPDD 280


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 498 EANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYH 659
           EAN  ATL + A T N  I +   +Y  Y  SL        YR  +PV   F H
Sbjct: 508 EANRNATLYSYALTENFLIFTTSNNYIVY-FSLSEWAIVSEYRHVVPVRSIFPH 560


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 498 EANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYH 659
           EAN  ATL + A T N  I +   +Y  Y  SL        YR  +PV   F H
Sbjct: 508 EANRNATLYSYALTENFLIFTTSNNYIVY-FSLSEWAIVSEYRHVVPVRSIFPH 560


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 123 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 239
           K+ P  + P+   G  YQQ++Q      PP + NAY+ P
Sbjct: 204 KVHPMPYHPQMNKGNHYQQLQQYT---QPPPVYNAYQPP 239


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 498 EANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYH 659
           EAN  ATL + A T N  I +   +Y  Y  SL        YR  +PV   F H
Sbjct: 508 EANRNATLYSYALTENFLIFTTSNNYIVY-FSLSEWAIVSEYRHVVPVRSIFPH 560


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 438 QLAAKLPGDLNVV--YLVNSGSEAN-ELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLT 608
           Q A +L   +N +  +L+N+ ++ N   + L A+    + +I S   +  GY + L  LT
Sbjct: 102 QQAVQLDQQINELNTFLINAQADTNPNNSPLFAQLTAFSNNITSQNATLQGYITKLNALT 161

Query: 609 ATQS 620
           ATQ+
Sbjct: 162 ATQA 165


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 438 QLAAKLPGDLNVV--YLVNSGSEAN-ELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLT 608
           Q A +L   +N +  +L+N+ ++ N   + L A+    + +I S   +  GY + L  LT
Sbjct: 105 QQAVQLDQQINELNTFLINAQADTNPNNSPLFAQLTAFSNNITSQNATLQGYITKLNALT 164

Query: 609 ATQS 620
           ATQ+
Sbjct: 165 ATQA 168


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 197 SFHLFYLLVRRSRVRSGHEIRRRHFGRAVRSDDVEA*FCSSIS 69
           SFH   L   R+R R     R R    + RSDDV A   S+++
Sbjct: 197 SFHTCLLYYLRNRFRHFFPARTRSARNSTRSDDVPAPLLSNVT 239


>Z78545-1|CAB01765.1|  150|Caenorhabditis elegans Hypothetical
           protein M03B6.1 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 551 HHIAADQLPRLHQQPHGPDGNPVVQD 628
           H + A + P L +QP GPDG  +  +
Sbjct: 66  HKMKARKCPTLDEQPRGPDGRIIFSE 91


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 46  QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 180
           ++R  S+     ++ + ++S R  R K RRR    DR+RD R  K
Sbjct: 460 RERRRSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDRSRDERNEK 504


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 175 WYEGPVYGLGTKSVGGILAV-LYVLTMSKHNFVPLLAIS 62
           W+ G + G+G  + GG+LA  L ++  S ++ V LL +S
Sbjct: 135 WWIGIIIGIGLYTAGGLLAYSLAIVATSFYHTVFLLVLS 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,966
Number of Sequences: 27780
Number of extensions: 401237
Number of successful extensions: 1180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)