Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o08
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    27   0.16 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   3.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   3.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = +3

Query: 249 AFKNLKSFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID 407
           AF NLKS K +NL  +        T   NL E    DL     +S  DF I D
Sbjct: 135 AFMNLKSLKRLNLKGNKIATIAYET-FQNLPELEDLDLAYN-SISSLDFNIFD 185



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 333 NLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSGFKA 446
           N+Q+H   DL++  Q+ + D RI    L+  A    K+
Sbjct: 106 NVQQHTFADLIQLEQIHLDDNRI--ESLERRAFMNLKS 141


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 404 NNSEVLNGNLIFSQKIFAMMLLKI*VS 324
           NNS V+N  LIF +  F MM L + V+
Sbjct: 81  NNSLVINKRLIFIE-CFVMMALTLIVT 106


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 404 NNSEVLNGNLIFSQKIFAMMLLKI*VS 324
           NNS V+N  LIF +  F MM L + V+
Sbjct: 81  NNSLVINKRLIFIE-CFVMMALTLIVT 106


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 567 KNMIGNKLITKQTPKEGILVNKVMVAESVNIKRE 668
           KNM+ ++L+ + T KE       ++  +VNI ++
Sbjct: 681 KNMLSDELLAQPTIKENFHTALEIMNRAVNIGQQ 714


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,812
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)