Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3o08
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 109 5e-25
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.6
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 28 1.6
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 28 1.6
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 2.9
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 3.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 3.8
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 5.0
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 6.6
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.6
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 109 bits (261), Expect = 5e-25
Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +3
Query: 315 ISTRHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALS-GFKADEYVVKAQILAGGRG 491
+ R+L L E+ S D+LRK+ V + S + ++ K + VVKAQ+LAGGRG
Sbjct: 18 LQKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRG 77
Query: 492 KGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRET 671
KG FD+G +GGV + + A+ MIG+KLIT+QT G + N V V E I++E
Sbjct: 78 KGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYVCERKFIRKEY 137
Query: 672 YFSIVMERSFNGAAIVASPAGGMDIE 749
YF+I+M+R IVAS GG+DIE
Sbjct: 138 YFAILMDRENQCPMIVASDQGGVDIE 163
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = -1
Query: 742 SIPPAGEATMAAPLKLLSITILKYVSLLIFTLSATITLFTKIPSLGVCLVISLF 581
SIP + + A L+ + + Y+SL F++ + LF + + +++++F
Sbjct: 375 SIPGSNQLPEFAGLEEFKLNVTDYMSLTDFSVCDAVALFVDLSDIADSILLNMF 428
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -3
Query: 557 DNLV-PVFCKMNSPFKPIVKVT 495
DN++ P+ K N PFKPI+++T
Sbjct: 413 DNIIYPLLRKYNIPFKPILRIT 434
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 450 EYVVKAQILAGGRGKGHFDNGFKGGVHLTKN 542
EY+ I G GKGH+ +G +G V+ N
Sbjct: 73 EYLYWGGIEKGPNGKGHYPSGIRGLVNAASN 103
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 450 EYVVKAQILAGGRGKGHFDNGFKGGVHLTKN 542
EY+ I G GKGH+ +G +G V+ + N
Sbjct: 73 EYLYWGGIEKGPTGKGHYPSGIRGLVNASAN 103
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 672 YFSIVMERSFNGAAIVASPAGGMD 743
+FS++M+++ NG +V +PA M+
Sbjct: 425 FFSLLMDKNINGPHLVIAPASTME 448
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 426 ALSGFKADEYVVKAQILAGGRGKGHFDNGF 515
++ AD YV ++A G GKG FD F
Sbjct: 545 SMGSLTADTYVPVRFVVANGAGKGGFDFSF 574
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 570 NMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFSIVM 689
N + L+ Q +E + N V ESVN+ TY+ V+
Sbjct: 158 NKVDRALLELQISQEELYQNFARVVESVNVVISTYYDKVL 197
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 570 NMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFSIVM 689
N + L+ Q +E + N V ESVN+ TY+ V+
Sbjct: 158 NKVDRALLELQISQEELYQNFARVVESVNVVISTYYDKVL 197
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 318 STRHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSGFKADEYVVKAQILAGGRGK 494
++ LN +E + +D L VSI + +LDTN L+ D V AQ+ GK
Sbjct: 467 NSEFLNNEEENDEDELSNVLVSIPSRTSVLERLDTNPLNE-STDAVVGCAQLYYPSLGK 524
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 324 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSG 437
RH N + + S +LLR+ + RI++ K DT SG
Sbjct: 778 RH-NARRNKSGNLLRRSSTKLWGSRIVELKPDTTITSG 814
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 307 GQYVDEARFMSLKLFKFLKAAII*F*LNLNHETGSLTELNLDNFH 173
G + +E + L + F A I F L L+H + + ELN FH
Sbjct: 201 GDHEEETVHIHLTISLFASAIISGFALLLDHPSAHIRELNSRFFH 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,355
Number of Sequences: 5004
Number of extensions: 54122
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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