Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o08
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...   101   5e-22
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   5.2  
10_08_0286 + 16504756-16504953,16505364-16505588,16505739-165057...    28   9.1  
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437...    28   9.1  

>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score =  101 bits (243), Expect = 5e-22
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
 Frame = +3

Query: 324 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDT-NALSG-FKAD-EYVVKAQILAGGRGK 494
           R LN+ E+   +L+ KY +++       S  +  N L   F ++ E VVK+QILAGGRG 
Sbjct: 26  RRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGL 85

Query: 495 GHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 674
           G F +G +GGVH+ K  ++   LA  M+G  L+TKQT  +G +V+KV + E +++  E Y
Sbjct: 86  GTFKSGLQGGVHIVK-AEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144

Query: 675 FSIVMERSFNGAAIVASPAGGMDIE 749
           F+I ++R+  G  I+A   GG  IE
Sbjct: 145 FAITLDRNTAGPLIIACSKGGTSIE 169


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 285 LASSTYC-PRVISTRHLNLQEHHSKDLLRKYQVSIQDF 395
           LA+++ C PR +   H+ ++ HH+ D+ +     +Q F
Sbjct: 263 LATTSRCKPRAVQAAHIRIKGHHASDIYQVGHAILQAF 300


>10_08_0286 +
           16504756-16504953,16505364-16505588,16505739-16505794,
           16505913-16506007,16506696-16506796,16507043-16507234
          Length = 288

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 480 GGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEG 617
           GGRG G  D G +GG    K     V  +K ++G   IT++T   G
Sbjct: 13  GGRGGGRGDKGGQGGSRGYKGGQGGVGTSKEVVGK--ITEETSVTG 56


>04_01_0332 +
           4378111-4378329,4378862-4378997,4379113-4379165,
           4379286-4379394,4379467-4379603,4379698-4379894,
           4379979-4380128,4380233-4380293,4380380-4380500,
           4380901-4380991,4381116-4381209,4381446-4381541,
           4382176-4382316,4382592-4382642,4383093-4383161,
           4384072-4384142,4384244-4384336,4384820-4384910,
           4386164-4386235,4387226-4387351,4387537-4387593,
           4387926-4388000,4388570-4388658,4388814-4388891,
           4389308-4389446,4389868-4389977,4390151-4390250,
           4390548-4390655
          Length = 977

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 372 YQVSIQDFRIIDSKLDTNALSGFKA 446
           Y++ I+DF   DS +D N+  GF+A
Sbjct: 326 YELHIRDFSAHDSTVDCNSRGGFRA 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,985
Number of Sequences: 37544
Number of extensions: 300182
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)