Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o08
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   4e-32
SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)              31   1.3  
SB_13954| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)               28   9.3  
SB_24872| Best HMM Match : efhand (HMM E-Value=0.48)                   28   9.3  
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   9.3  

>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score =  135 bits (326), Expect = 4e-32
 Identities = 64/102 (62%), Positives = 78/102 (76%)
 Frame = +3

Query: 444 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 623
           A EYV+KAQILAGGRGKG FD+G  GGVHLTK  D++      M G +L TKQTP EG++
Sbjct: 33  AAEYVIKAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPEGVM 92

Query: 624 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIE 749
           V +VMVAE+ +I+RETY +I+M+R F G  IVASP GGMDIE
Sbjct: 93  VTRVMVAEAYDIERETYLAILMDREFMGPVIVASPKGGMDIE 134


>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
 Frame = +3

Query: 324 RHLNLQEHHSKDLLRKYQVSIQD---FRIIDSKLDTNALSGFKADE--YVVKAQILAGGR 488
           R+L++ EHHS  +L+   +        R  +   +   + G    E   VVKAQ+LAGGR
Sbjct: 39  RNLSVHEHHSMKILQDAGILTPKGGVARTAEQAYEIATVLGESEVEGDMVVKAQVLAGGR 98

Query: 489 GKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRE 668
           GKG F+ G KGGV +  + D+  ++A  MIG KL TKQT + G + N+V V     +   
Sbjct: 99  GKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTGELGRICNEVFVFNGAGLAMA 158

Query: 669 T 671
           T
Sbjct: 159 T 159


>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
          Length = 902

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 31/117 (26%), Positives = 51/117 (43%)
 Frame = +3

Query: 318  STRHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSGFKADEYVVKAQILAGGRGKG 497
            + RHL +   H  D +R  QVS+   R +D  +    +S    D+ V   Q+        
Sbjct: 720  NVRHLEVSVRHLDDNVRHLQVSV---RHLDDNVRHLQVSVQHLDDNVRHLQV-----SVR 771

Query: 498  HFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRE 668
            H D+  +   HL  N   + D  +++   K+++K    E  L N+V  AE    K+E
Sbjct: 772  HLDDNVR---HLQVNVRHLDDNVRHL--QKIVSKLEESEHALYNRVRAAEMQRRKQE 823


>SB_13954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 703 LKLLSITILKYVSLLIFTLSATITLFTKIPSLGVCLVIS---LFPIIFLAKSTILSR 542
           LKL+SIT+L  +  +  ++S+    FT IP  G+  V++   L  + F+  +  L R
Sbjct: 69  LKLMSITLLVMIPWMKVSVSSQGGAFTTIPVTGMLAVLAWGLLLHLFFMVMNLALCR 125


>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = -1

Query: 721 ATMAAPLKLLSITILKYVSLLIFTLSATITLFTKIPSLGVCLVISLFPIIFLAKSTILSR 542
           +T++  + + S T+ ++V + + TLS  + ++T   S  V +  S      +  S+ LSR
Sbjct: 173 STLSRFVVVYSSTLYRFVVVYLSTLSRFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLSR 232

Query: 541 FFV 533
           F V
Sbjct: 233 FVV 235


>SB_24872| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 743 IHTSSWRSYNGCTIKTS--LHYNTKVCLSFDIHTFCDHNFI 627
           +H++ W  Y     + +  L YN + CLS+++     +N++
Sbjct: 307 VHSARWMIYEEIVKRCAQCLSYNVRQCLSYNVRQCLSYNYL 347


>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1054

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 139 FSLRSADCSFCNENCLNLVQ*DCLFRG*DSVKI 237
           ++L++ +C   NE CL+L    CLF+G D + +
Sbjct: 495 YTLKNNECEDVNE-CLDLFLNTCLFKGLDCINL 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,765,809
Number of Sequences: 59808
Number of extensions: 355416
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)